BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0120 (442 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si... 28 2.4 At5g60150.1 68418.m07540 expressed protein ; expression supporte... 28 3.2 At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ... 27 7.4 At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ... 26 9.8 >At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) similar to kinesin heavy chain isolog GB:AAB63609 GI:2262101 from [Arabidopsis thaliana] Length = 974 Score = 28.3 bits (60), Expect = 2.4 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = -2 Query: 438 ERPKTSESHRSSFKSLAGPSTPISSQEAFLILKSP 334 E PKT H S K P TP S+ LKSP Sbjct: 612 ETPKTKNHHHQSKKKKLLPLTPSSASNRQNFLKSP 646 >At5g60150.1 68418.m07540 expressed protein ; expression supported by MPSS Length = 1195 Score = 27.9 bits (59), Expect = 3.2 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = +2 Query: 263 DEIGFFEDISDTIITNPGDEFLC-VGDFN 346 DE+ F++ S ++NPG+E +C DF+ Sbjct: 566 DELTLFDNYSQLKVSNPGEEDMCTTNDFS 594 >At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain Length = 410 Score = 26.6 bits (56), Expect = 7.4 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +3 Query: 225 YCCYFPQCSSSLKMKLVFLRIFLTQLLLIPVTNFC 329 +C + QC + + F+ +F T LL + V FC Sbjct: 176 HCPWVGQCIAQRNYRFFFMFVFSTTLLCVYVFAFC 210 >At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain Length = 443 Score = 26.2 bits (55), Expect = 9.8 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 225 YCCYFPQCSSSLKMKLVFLRIFLTQLLLIPVTNFC 329 +C + QC + F+ +F T LL I V FC Sbjct: 178 HCPWVGQCIGMRNYRFFFMFVFSTTLLCIYVFAFC 212 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,386,530 Number of Sequences: 28952 Number of extensions: 144609 Number of successful extensions: 396 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 396 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 702840360 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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