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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0120
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si...    28   2.4  
At5g60150.1 68418.m07540 expressed protein ; expression supporte...    28   3.2  
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ...    27   7.4  
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ...    26   9.8  

>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
           similar to kinesin heavy chain isolog GB:AAB63609
           GI:2262101 from [Arabidopsis thaliana]
          Length = 974

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 438 ERPKTSESHRSSFKSLAGPSTPISSQEAFLILKSP 334
           E PKT   H  S K    P TP S+      LKSP
Sbjct: 612 ETPKTKNHHHQSKKKKLLPLTPSSASNRQNFLKSP 646


>At5g60150.1 68418.m07540 expressed protein ; expression supported
           by MPSS
          Length = 1195

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 263 DEIGFFEDISDTIITNPGDEFLC-VGDFN 346
           DE+  F++ S   ++NPG+E +C   DF+
Sbjct: 566 DELTLFDNYSQLKVSNPGEEDMCTTNDFS 594


>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 410

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 225 YCCYFPQCSSSLKMKLVFLRIFLTQLLLIPVTNFC 329
           +C +  QC +    +  F+ +F T LL + V  FC
Sbjct: 176 HCPWVGQCIAQRNYRFFFMFVFSTTLLCVYVFAFC 210


>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 443

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 225 YCCYFPQCSSSLKMKLVFLRIFLTQLLLIPVTNFC 329
           +C +  QC      +  F+ +F T LL I V  FC
Sbjct: 178 HCPWVGQCIGMRNYRFFFMFVFSTTLLCIYVFAFC 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,386,530
Number of Sequences: 28952
Number of extensions: 144609
Number of successful extensions: 396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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