Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0118
         (709 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2ETA8 Cluster: Leucine Rich Repeat family protein; n=1...    36   1.3  
UniRef50_A6EC24 Cluster: Small-conductance mechanosensitive chan...    33   6.9  
UniRef50_Q1ZC08 Cluster: Response regulator; n=1; Psychromonas s...    33   9.1  
UniRef50_Q5DBE9 Cluster: SJCHGC01974 protein; n=2; Eukaryota|Rep...    33   9.1  
UniRef50_Q6ZVA9 Cluster: CDNA FLJ42813 fis, clone BRCAN2012355; ...    33   9.1  

>UniRef50_A2ETA8 Cluster: Leucine Rich Repeat family protein; n=1;
           Trichomonas vaginalis G3|Rep: Leucine Rich Repeat family
           protein - Trichomonas vaginalis G3
          Length = 799

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +1

Query: 445 NII*YNQCFSYY--KTRNANVINYLF*FHMTITVQYAN*L*IVEIIINFTVQK*YNV*KP 618
           NII      S+Y  K+   N++ ++  FH    +   N +    + INF++++ YN+  P
Sbjct: 84  NIIEIGLSDSFYGIKSTKENILRFVRYFHRNYLL--INGIIPTNLKINFSIEESYNIINP 141

Query: 619 RVIWGIPVLYEGLKSRNIKLR 681
            +   +  ++EGL + N  LR
Sbjct: 142 GIFLSLSKMFEGLYNANCSLR 162


>UniRef50_A6EC24 Cluster: Small-conductance mechanosensitive
           channel; n=1; Pedobacter sp. BAL39|Rep:
           Small-conductance mechanosensitive channel - Pedobacter
           sp. BAL39
          Length = 377

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 210 IEGPYNAHIPILAFN*NLNFRRTHFLWHSGF 118
           ++GP N  +P+L  N +L+F +    WHS F
Sbjct: 58  LQGPVNVFLPLLMLNISLSFMKMRPQWHSAF 88


>UniRef50_Q1ZC08 Cluster: Response regulator; n=1; Psychromonas sp.
           CNPT3|Rep: Response regulator - Psychromonas sp. CNPT3
          Length = 516

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 549 KLIMNCRNNYKFHSTEIV*RVKTPRYMGDTRVIRGTEIA*YK 674
           +LI N RN  K H+T IV R   P    + ++IR   I+ YK
Sbjct: 93  RLIKNIRNKLKNHTTRIVLRTGQPGQAPERKIIREYNISDYK 134


>UniRef50_Q5DBE9 Cluster: SJCHGC01974 protein; n=2; Eukaryota|Rep:
           SJCHGC01974 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 138

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 606 VILFLYCEIYNYFYNS*LICILYSNCHVKLK*IIYYICVPSFVIGKTLVILY-YIRISIC 430
           + +++Y ++Y Y Y    IC +Y   ++ +  I  YI +  ++     V +Y YI I IC
Sbjct: 41  IYIYIYLDVYMYIYICIYICYIYIYMYIYIY-IYIYISIYIYIYIYIYVYIYIYIYIYIC 99

Query: 429 T*RFI 415
              +I
Sbjct: 100 IYMYI 104


>UniRef50_Q6ZVA9 Cluster: CDNA FLJ42813 fis, clone BRCAN2012355;
           n=1; Homo sapiens|Rep: CDNA FLJ42813 fis, clone
           BRCAN2012355 - Homo sapiens (Human)
          Length = 180

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = -2

Query: 612 SHVILFLYCEIYNYFYNS*LICILYSNCHVKLK*IIYYICVPSFVIGKTLVILYYIRISI 433
           +H+ + +Y  IY Y Y    IC+ + N +V +  +  Y C+  ++   TL +  Y    +
Sbjct: 89  AHIHMCVYTYIYVYIYTHIHICV-HINMYVSIY-VYIYTCIQIYIYMYTLYVCTY--TYM 144

Query: 432 CT*RFI*SHTSAL 394
           CT   I  HTS +
Sbjct: 145 CTYIHICIHTSII 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,899,739
Number of Sequences: 1657284
Number of extensions: 12626712
Number of successful extensions: 21417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21407
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)