Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0118
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    26   6.1  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    26   6.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.0  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.0  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   8.0  

>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 SWKKPECQRKCVRRKFK 160
           SW+KP     CVRR+F+
Sbjct: 28  SWRKPRGIDSCVRRRFR 44


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 SWKKPECQRKCVRRKFK 160
           SW+KP     CVRR+F+
Sbjct: 28  SWRKPRGIDSCVRRRFR 44


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 443 VYLFVHNALYEVIQARYAR 387
           +Y F+H  L+E++  +Y R
Sbjct: 246 IYRFIHAQLFEILDGKYVR 264


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 296 DLKVYAMCDISNPHYNTV 349
           DLKVY + D+S P +N V
Sbjct: 64  DLKVYRVPDLSRPSFNEV 81


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 684 ITQFYITRFQSLV*HGYPPYNAGFSHVILF-LYCEIY 577
           + QF+   F   + H YP Y + FS +  F L+C I+
Sbjct: 384 LRQFFHNEFPRFLPHAYPYYASCFSVLGAFLLFCGIW 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,746
Number of Sequences: 5004
Number of extensions: 59322
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)