Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0118
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0329 + 22081052-22082434                                         29   4.8  
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    28   6.3  
01_03_0315 + 14947450-14948284,14948439-14948540,14948656-149488...    28   8.4  

>02_04_0329 + 22081052-22082434
          Length = 460

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 350 LPCYSGDYLYRTWHRLSDLPS 288
           L CY+ D L+R W RL  +PS
Sbjct: 107 LDCYALDPLFRKWQRLPPMPS 127


>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
 Frame = -2

Query: 642 HGYPPYNAGFSHVILFLYCEIY-NYFY------NS*LICI-LYSNC--HVKL 517
           H +P YNAG++ + + +   IY NY Y      ++ ++CI ++S C  H+KL
Sbjct: 58  HMFPAYNAGYAILAVTIVLSIYRNYRYFFCFVSSAAILCIYIFSMCALHIKL 109


>01_03_0315 +
           14947450-14948284,14948439-14948540,14948656-14948840,
           14949444-14949654,14949816-14949999,14950108-14950258,
           14950371-14950679
          Length = 658

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 401 ARYARILTTRIL*RGTNLPCYSGDYLYRTWHRLSDLPSSN 282
           AR  RIL TR   R    P YSGD + R  +  + +P  N
Sbjct: 221 ARGGRILATRCTMRYEIYPFYSGDTMLRIINLATTVPEMN 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,822,173
Number of Sequences: 37544
Number of extensions: 316167
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)