Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0118
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 458 YYIIFVYLFVHNALYEVIQARYARILTTRIL*RGTNL 348
           Y+++  +LF  NAL+   Q   AR LT   L  G NL
Sbjct: 50  YFLLSAFLFGANALFTPGQELPARGLTAVFL--GLNL 84


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 101 VRLSWKKPECQRKCVRRKFK 160
           ++ +W+KP+     VRR+FK
Sbjct: 30  LKRNWRKPKGIDNRVRRRFK 49


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 114 HESRTWRRQVLTYA 73
           H+ R W  Q+++YA
Sbjct: 181 HDYRVWNHQLISYA 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,315
Number of Sequences: 438
Number of extensions: 4577
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)