Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0118
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue...    29   3.0  
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue...    29   3.0  

>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
           light photoreceptor (PHH1) 97% identical  to photolysase
           (PHH1)  (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
           (SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
           gene; contains Pfam profiles PF03441: FAD binding domain
           of DNA photolyase and PF00875: deoxyribodipyrimidine
           photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
           GI:18026275
          Length = 612

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 431 VHNALYEVIQARYARILTTRIL*RGTNLPCYSGDYLYRTW 312
           V N LY+ +       +  +++ RG ++  Y+GD LY  W
Sbjct: 99  VFNHLYDPVSLVRDHTVKEKLVERGISVQSYNGDLLYEPW 138


>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
           light photoreceptor (PHH1) 97% identical  to photolysase
           (PHH1)  (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
           (SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
           gene; contains Pfam profiles PF03441: FAD binding domain
           of DNA photolyase and PF00875: deoxyribodipyrimidine
           photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
           GI:18026275
          Length = 612

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 431 VHNALYEVIQARYARILTTRIL*RGTNLPCYSGDYLYRTW 312
           V N LY+ +       +  +++ RG ++  Y+GD LY  W
Sbjct: 99  VFNHLYDPVSLVRDHTVKEKLVERGISVQSYNGDLLYEPW 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,221
Number of Sequences: 28952
Number of extensions: 280961
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)