Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0117
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    91   1e-19
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    28   1.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.4  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.9  

>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 39/87 (44%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
 Frame = +3

Query: 258 VSGSDYMKISEQMG--GEDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVI 431
           V GSD  K  EQ+   GE+V+ +F+Y F+ENGL  ++ G++L+S+S +  LGE+K Q+++
Sbjct: 51  VGGSDLSKQQEQLSVNGENVIDSFDYAFAENGLTAYRYGQQLASQSFIAWLGEEKYQKLV 110

Query: 432 NFAMGYMSNIKLPVKRGNFIEFRSSIL 512
           NF + Y++++ +PVKRG FIEFR+ ++
Sbjct: 111 NFCLHYIADLDIPVKRGTFIEFRNGMI 137



 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 31/58 (53%), Positives = 41/58 (70%)
 Frame = +2

Query: 509 LNICPVGRSCNQIERDQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFP 682
           +NI PVGR+ N  ER++F  +D   K+R   V+ L+ KFKD GL F++GGQIS DVFP
Sbjct: 137 INISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFDVFP 194



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 142 KVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGW 258
           K L LFDVDGTLT  R  ++ E     L  ++  V +G+
Sbjct: 13  KTLVLFDVDGTLTPARLSVSPEMLE-TLQNLRKVVAIGF 50


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 49  SLVVSYLSTGPKLPPKFKLVSPFETIMTSQKKVLYLFDVDGTLT 180
           SL+   +S  P+L  K+ L SP  ++  + +K   + ++DGT+T
Sbjct: 36  SLLHYQISENPELLGKYDLSSPILSLEYTDEKTALVGNLDGTVT 79


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -2

Query: 260 DQPTSTFDFTSSRMNLLNSSVIFWRGFVNVPSTSNKYKTFF*LVIIVSKGETSLNFGGNF 81
           + P+STFD +++  N  N++  F   F N   +    +  F     ++ G  S   G  F
Sbjct: 123 NNPSSTFDMSTNLFNSKNANTSFTNAFSNEGISPGFLRDCFPSSNSITTGTASPKLGSPF 182

Query: 80  GPVDK 66
             +++
Sbjct: 183 NHINR 187


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 456 WTCNPWRSLLPLAVFV 409
           WT N W++LLP++ ++
Sbjct: 27  WTFNKWKALLPVSAYI 42


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 418 SFCSPKWLT---MLSELNFFPFL*CTSPFSLN 332
           S CSP W++   +L+ L F P + C++   LN
Sbjct: 121 STCSPLWISVIYLLNPLTFLPGIACSADMILN 152


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 296  HLFGNLHII*TTDQPTSTFDFTSSRMNLLNSSV 198
            H+F + ++I   D+P+S   FT S  + L+  V
Sbjct: 1580 HMFSDSNVIIREDEPSSLISFTLSSPDYLSKMV 1612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,911
Number of Sequences: 5004
Number of extensions: 61524
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)