Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0117
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_4004| Best HMM Match : PSS (HMM E-Value=1.7e-10)                    31   0.87 
SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_12502| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score =  109 bits (262), Expect = 2e-24
 Identities = 52/95 (54%), Positives = 68/95 (71%)
 Frame = +3

Query: 228 RGKIKSGCRLVSGSDYMKISEQMGGEDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLG 407
           R K+K G  LV GSD  K+ EQMGGEDV   ++Y F ENGLV +K+GK L+ ++I   LG
Sbjct: 39  RKKVKIG--LVGGSDQCKVEEQMGGEDVTKLYDYFFPENGLVAYKDGKLLAIQNIKKFLG 96

Query: 408 EQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSIL 512
           E  +QE+I+F + YMSNIK+P KRG FIEFR  ++
Sbjct: 97  EDSIQELIDFCLSYMSNIKIPKKRGTFIEFRHGLI 131



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 33/58 (56%), Positives = 44/58 (75%)
 Frame = +2

Query: 509 LNICPVGRSCNQIERDQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFP 682
           +N+ P+GR+C Q ER +F EYD  H VR +FVEAL+ KF   GL++++GGQIS DVFP
Sbjct: 131 INVSPIGRNCTQEERIEFFEYDKVHNVRGKFVEALKEKFPHLGLQYSIGGQISFDVFP 188



 Score = 35.5 bits (78), Expect = 0.041
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +1

Query: 133 SQKKVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVG 255
           + + +L LFDVDGT+T  R  I  E R  ++ E++ KV +G
Sbjct: 6   NDRNILCLFDVDGTVTPSRLVIQPEMRE-LMAELRKKVKIG 45


>SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 245 TFDFTSSRMNLLNSSVIFWRGFVNVPSTSNKYKTFF*LVIIVSKGETSLN 96
           TF  T   +N++  +V++WR FVN       Y   F + II +    SLN
Sbjct: 311 TFAITMLPLNMMRITVLYWRDFVN----QTYYPILFFVTIIFTAAYASLN 356


>SB_4004| Best HMM Match : PSS (HMM E-Value=1.7e-10)
          Length = 283

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +3

Query: 192 KNYRRIQEVHS*RGKIKSGCRLVSGSDYMKISEQMGGEDVVSNFNY 329
           KN    +  HS R +  S C  VS  DY   SEQ+  EDV   F Y
Sbjct: 54  KNKMADERTHSRRKRTFSSCSTVSSDDYHDASEQI-VEDVTLEFFY 98


>SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 657 PPRANFKPESLNLL*SASTNWCLTLCFES 571
           P +  F+ E++ +L    TN C  +CFES
Sbjct: 112 PSQGGFELEAMQILGKEITNICTIICFES 140


>SB_12502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 521 PVGRSCNQIERDQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQIS 667
           P  +S  ++E D+F E   + + R QF+E ++S  +    +  +  +IS
Sbjct: 127 PASKSMEEVEVDRFDEVLQEIEERKQFLEEMESLGQGKKYRTVINTEIS 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,781,998
Number of Sequences: 59808
Number of extensions: 419621
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)