Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0117
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82268-3|CAB05198.2| 225|Caenorhabditis elegans Hypothetical pr... 93 1e-19
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical pr... 31 0.77
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 29 4.1
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 4.1
U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical pr... 28 5.4
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 28 7.2
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 28 7.2
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 28 7.2
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 28 7.2
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 28 7.2
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 28 7.2
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 28 7.2
AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical ... 28 7.2
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein. 27 9.5
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated... 27 9.5
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated... 27 9.5
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 9.5
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 9.5
>Z82268-3|CAB05198.2| 225|Caenorhabditis elegans Hypothetical
protein F52B11.2 protein.
Length = 225
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 3/89 (3%)
Frame = +3
Query: 255 LVSGSDYMKISEQMGGED---VVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQE 425
+V GSD+ KI+EQ+ D ++S F+Y FSENGL K + +SI +G+ KLQE
Sbjct: 16 IVGGSDFKKITEQLADHDKDLLLSLFDYTFSENGLYGFKGTEPYPVQSIQKAIGDAKLQE 75
Query: 426 VINFAMGYMSNIKLPVKRGNFIEFRSSIL 512
+INFA+ YMS+I+LPVKRGNF+EFR+ ++
Sbjct: 76 LINFALRYMSDIQLPVKRGNFVEFRNGMI 104
Score = 81.4 bits (192), Expect = 6e-16
Identities = 34/58 (58%), Positives = 45/58 (77%)
Frame = +2
Query: 509 LNICPVGRSCNQIERDQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFP 682
+N+ P+GRSC+Q ER QF E+D KH +R +F E L+ KF GL+FA+GGQIS+DVFP
Sbjct: 104 INLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKFGQYGLQFAIGGQISVDVFP 161
>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 31.5 bits (68), Expect = 0.58
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Frame = +3
Query: 186 APKNYRRIQEVHS*RGKIKSGCRLVS-----GSDY--MKISEQMG--GEDVVSNFNYVFS 338
AP+N +RI E+ GKI+ R+ S ++Y KI+ +G GE +V++ V +
Sbjct: 1819 APRNMKRINEICDLMGKIEENERVFSRLAAVKNNYHPRKITSTLGPRGERMVTDLTDVRT 1878
Query: 339 ENGLVHHKNGKKLS 380
++ V H++ KK+S
Sbjct: 1879 KDMFVMHEHTKKIS 1892
>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
T01H10.8 protein.
Length = 2692
Score = 31.5 bits (68), Expect = 0.58
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Frame = +3
Query: 186 APKNYRRIQEVHS*RGKIKSGCRLVS-----GSDY--MKISEQMG--GEDVVSNFNYVFS 338
AP+N +RI E+ GKI+ R+ S ++Y KI+ +G GE +V++ V +
Sbjct: 1819 APRNMKRINEICDLMGKIEENERVFSRLAAVKNNYHPRKITSTLGPRGERMVTDLTDVRT 1878
Query: 339 ENGLVHHKNGKKLS 380
++ V H++ KK+S
Sbjct: 1879 KDMFVMHEHTKKIS 1892
>Z68222-7|CAA92504.2| 568|Caenorhabditis elegans Hypothetical
protein ZK1251.8 protein.
Length = 568
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 366 GKKLSSESIVNHLGEQ---KLQEVINFAMGYMSNIKLPVKRGNFIEFR 500
GKK++ +S+V HLG+Q +E+ NF M + + V++G R
Sbjct: 417 GKKMTMKSLVKHLGDQFNIPEEELANFDMSAFVDNAIKVEKGEIATLR 464
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 456 NIKLPVKRGNFIEFRSSILIFALLEDHVIK*SEISFLSMIQNTKLGTNLLKHFK 617
N+KLP K N +FA + DH I F + N K+G NL +F+
Sbjct: 254 NVKLPGKSENRKSSTGVWALFAPIADHHIVTPVALFRLNLYNFKIGKNLQNNFE 307
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 456 NIKLPVKRGNFIEFRSSILIFALLEDHVIK*SEISFLSMIQNTKLGTNLLKHFK 617
N+KLP K N +FA + DH I F + N K+G NL +F+
Sbjct: 264 NVKLPGKSENRKSSTGVWALFAPIADHHIVTPVALFRLNLYNFKIGKNLQNNFE 317
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 336 SENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFA 440
+E GLV +N KL E++ + E +LQE++ A
Sbjct: 104 AELGLVTVRNNVKLMQEALKPDISESRLQEILQMA 138
>U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical
protein R07G3.6 protein.
Length = 304
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 367 PFL*CTSPFSLNT*LKLDTTSSPP 296
P L ++PF+LN +K+ TT SPP
Sbjct: 223 PILSLSNPFTLNPLMKMFTTPSPP 246
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 244 VDVGWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 375
+++ W ++Q I N W CP S +K D+ ++ +N
Sbjct: 284 LEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 327
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 244 VDVGWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 375
+++ W ++Q I N W CP S +K D+ ++ +N
Sbjct: 284 LEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 327
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 244 VDVGWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 375
+++ W ++Q I N W CP S +K D+ ++ +N
Sbjct: 319 LEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 244 VDVGWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 375
+++ W ++Q I N W CP S +K D+ ++ +N
Sbjct: 319 LEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 244 VDVGWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 375
+++ W ++Q I N W CP S +K D+ ++ +N
Sbjct: 319 LEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 244 VDVGWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 375
+++ W ++Q I N W CP S +K D+ ++ +N
Sbjct: 284 LEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 327
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 244 VDVGWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 375
+++ W ++Q I N W CP S +K D+ ++ +N
Sbjct: 319 LEMDWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362
>AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical
protein Y32H12A.2 protein.
Length = 610
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 279 KISEQMGGEDVVSNF--NYVFSENGLVHHKNGKKLSSESI 392
KI+ +MG + + F +Y F N + + +GK SS++I
Sbjct: 50 KIATEMGSDRIFEEFLQDYAFLRNAVEEYLDGKPTSSDTI 89
>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
Length = 1338
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 554 DQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVF 679
+ SEY+S +H+ V+ L + F +S + L ++ DVF
Sbjct: 1171 EAISEYESLRDGQHENVQRLIAAFNNSNFLYLLSERLYEDVF 1212
>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
protein 89, isoform c protein.
Length = 1393
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 554 DQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVF 679
+ SEY+S +H+ V+ L + F +S + L ++ DVF
Sbjct: 1135 EAISEYESLRDGQHENVQRLIAAFNNSNFLYLLSERLYEDVF 1176
>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
protein 89, isoform d protein.
Length = 1396
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 554 DQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVF 679
+ SEY+S +H+ V+ L + F +S + L ++ DVF
Sbjct: 1138 EAISEYESLRDGQHENVQRLIAAFNNSNFLYLLSERLYEDVF 1179
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 554 DQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVF 679
+ SEY+S +H+ V+ L + F +S + L ++ DVF
Sbjct: 7183 EAISEYESLRDGQHENVQRLIAAFNNSNFLYLLSERLYEDVF 7224
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 554 DQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVF 679
+ SEY+S +H+ V+ L + F +S + L ++ DVF
Sbjct: 7823 EAISEYESLRDGQHENVQRLIAAFNNSNFLYLLSERLYEDVF 7864
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,341
Number of Sequences: 27780
Number of extensions: 336208
Number of successful extensions: 784
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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