Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0117
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 228 RGKIKSGCRLVSGSDYMKI 284
           RG +K GC LVSG    K+
Sbjct: 343 RGTLKKGCLLVSGIASAKV 361


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 166 DGTLTKPRQKITEEFRRFI 222
           D   T+ R+++TE  RRF+
Sbjct: 429 DFKTTRTREQVTEALRRFV 447


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 166 DGTLTKPRQKITEEFRRFI 222
           D   T+ R+++TE  RRF+
Sbjct: 344 DFKTTRTREQVTEALRRFV 362


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 166 DGTLTKPRQKITEEFRRFI 222
           D   T+ R+++TE  RRF+
Sbjct: 663 DFKTTRTREQVTEALRRFV 681


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 G*TKTARGNKLRHGLHVQH 460
           G T T+ G +L HG+  QH
Sbjct: 180 GTTTTSTGTRLLHGILSQH 198


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +3

Query: 339 ENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNF 488
           E  ++   + K + + +  N+   +KL   IN+       + +P+  GNF
Sbjct: 300 EPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYGNF 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,693
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)