Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0117
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45790.1 68415.m05695 eukaryotic phosphomannomutase family pr...   100   1e-21
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    30   1.3  
At1g09730.1 68414.m01092 Ulp1 protease family protein low simila...    29   2.9  
At5g50090.2 68418.m06203 expressed protein                             29   3.8  
At5g50090.1 68418.m06202 expressed protein                             29   3.8  
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR...    28   5.0  
At5g60890.1 68418.m07638 receptor-like protein kinase (ATR1) (MY...    28   6.7  
At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1) domain...    27   8.8  
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    27   8.8  

>At2g45790.1 68415.m05695 eukaryotic phosphomannomutase family
           protein contains Pfam profile: PF03332 eukaryotic
           phosphomannomutase
          Length = 246

 Score =  100 bits (239), Expect = 1e-21
 Identities = 44/86 (51%), Positives = 67/86 (77%)
 Frame = +3

Query: 255 LVSGSDYMKISEQMGGEDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVIN 434
           +V GSD  KISEQ+G + V ++++Y FSENGLV HK+GK +  +S+  HLG+ KL+E+IN
Sbjct: 44  VVGGSDLSKISEQLG-KTVTNDYDYCFSENGLVAHKDGKSIGIQSLKLHLGDDKLKELIN 102

Query: 435 FAMGYMSNIKLPVKRGNFIEFRSSIL 512
           F + Y++++ +P+KRG FIEFR+ +L
Sbjct: 103 FTLHYIADLDIPIKRGTFIEFRNGML 128



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 28/58 (48%), Positives = 39/58 (67%)
 Frame = +2

Query: 509 LNICPVGRSCNQIERDQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFP 682
           LN+ P+GR+C+Q ERD+F  YD    +R + V  L+ +F    L F++GGQIS DVFP
Sbjct: 128 LNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRERFAHLNLTFSIGGQISFDVFP 185



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +1

Query: 145 VLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVG 255
           V+ LFDVDGTLT PR++ T E   FI  E++  V +G
Sbjct: 8   VIALFDVDGTLTAPRKEATPELLDFI-RELRKVVTIG 43


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 222 NEPPEFFCNFLARFCQRSVNIEQIQNFLLTSHNCLKR 112
           ++ P F  + L+R   R++++ Q Q F LTSH  L+R
Sbjct: 20  SDSPRFPISLLSRNLSRTLHVPQSQLFGLTSHKLLRR 56


>At1g09730.1 68414.m01092 Ulp1 protease family protein low
           similarity to SP|Q9GZR1 SUMO-1-specific protease 1 (EC
           3.4.22.-) (Sentrin-specific protease SENP6) (Protease
           FKSG6) {Homo sapiens}; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 984

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
 Frame = +3

Query: 234 KIKSGCRLVSGSDYMKISEQMGGEDVVSNFNYVFSEN-GLVHHKNGKKLSSESIVN---- 398
           KIKS    ++ ++ +  S + G ED+VS   Y + +N GL+  +    L  E+       
Sbjct: 301 KIKS---FLANNEEVPFSCEFGVEDIVS-IQYNWYQNVGLIILRIRVLLKDENCHEGMYT 356

Query: 399 -HLGEQKLQEVINFAMGYMSNIKLPVKRGNF 488
            HLG  K+  V +  + YM  +K+ VK  N+
Sbjct: 357 CHLGYHKILPVKSGLVSYMEELKIAVKEHNW 387


>At5g50090.2 68418.m06203 expressed protein 
          Length = 153

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 268 QII*RFPNKWAERTSCPISTTYSVKMD 348
           +++ + PN   E+ SCP+S +Y +KM+
Sbjct: 11  RVVIQHPNGKEEKLSCPVSASYVMKMN 37


>At5g50090.1 68418.m06202 expressed protein 
          Length = 159

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 268 QII*RFPNKWAERTSCPISTTYSVKMD 348
           +++ + PN   E+ SCP+S +Y +KM+
Sbjct: 11  RVVIQHPNGKEEKLSCPVSASYVMKMN 37


>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1294

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 252 YIHF*FYLVKNEPPEFFCNFLARFCQRSVNIEQIQNFLLTSHNCLK 115
           Y+ +  Y +K  P  FF  FL   C  + N+E++ + +    N  K
Sbjct: 584 YLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKK 629


>At5g60890.1 68418.m07638 receptor-like protein kinase (ATR1)
           (MYB34) identical to receptor-like protein kinase(ATR1)
           GI:3150037 from [Arabidopsis thaliana]; contains PFAM
           profile: myb DNA binding domain PF00249; identical to
           cDNA putative transcription factor (MYB34) mRNA, partial
           cds GI:3941443
          Length = 295

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
 Frame = -2

Query: 344 IFTEYVVEIGHDVLSAHLFGNLHII*TT------DQPTSTFDFTSSRMNLLNSSVIFWRG 183
           + ++Y VE+  D+L+  + GN  +   +      D PTST     +  ++L ++   + G
Sbjct: 157 VASKYAVELNRDLLTGIISGNSTVAEDSQNSGDVDSPTSTLLNKMAATSVLINTTTTYSG 216

Query: 182 FVNVPSTSNKYKTFF 138
           F +  S ++++  FF
Sbjct: 217 FSDNCSFTDEFNEFF 231


>At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein similar to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 811

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 212 GGSFLTR*NQKWM*VGQWFRLYEDFRTNGRRGRRV 316
           G  FL R         QWF +Y + RTN   G ++
Sbjct: 729 GNQFLARIPNSGQVTTQWFSVYNNLRTNAGMGFKI 763


>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 160 DVDGTLTKPRQKITEEFRRFIL--DEVKSKVDVGWS 261
           ++DG   K   K++  F  F+L  DE++ K D+ WS
Sbjct: 102 NLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWS 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,160
Number of Sequences: 28952
Number of extensions: 305229
Number of successful extensions: 709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)