Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0116
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 28 1.1
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 28 1.1
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.4
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 3.4
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.5
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 26 5.9
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 26 5.9
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 5.9
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 7.8
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 302 MLLVCTLLFTLTHINADSDE---GSISKIGTSVGHTMNIYYCYSCG 430
+LL C +LF +T + S SI I T +G ++YYC++ G
Sbjct: 515 ILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHG 560
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 14 TLLITFSLIIKKCHLKNKIKEALKQWFLKFLKPISIDLYFVLFLFITKLK 163
T+ F L + +L + W+LK+L P S + + FL I+KL+
Sbjct: 312 TIFHPFILADNRHYLFYVFNRLFRIWWLKYLGPFSYLILYYFFLDISKLQ 361
>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 517 GFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMM 672
GF MYL ++GFG +V + V F ++ WW+ + L+ ++
Sbjct: 11 GFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTWLFVLVI 62
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 265 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 345
++ + YV+PKR++ + TN YQ
Sbjct: 57 FETISDYVIPKRELCNKTITVCTNHYQ 83
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 546 WFWQNVGHHVYTQRCEY 596
W WQN+G YT+ C++
Sbjct: 75 WNWQNLGISRYTKDCDF 91
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +3
Query: 306 YSFVLYYLH*LISMLIVMKAALVKLVQVSGIQ*ISITVILVATKRYLKTMQELYNKNTQR 485
++F+L + H ++ M K LV L + + + L T ++KT++E +N
Sbjct: 164 HNFILLHPHEVLEMPAAWKNCLVWLPKAKA-KILGRKHSLAITSEFMKTLEEDFNAYYNW 222
Query: 486 FLSLELTIPTWF 521
F+ WF
Sbjct: 223 FVEWSRDKKDWF 234
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 523 NMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAW 630
N Y+ +GF ++ +LSG I LN P AW
Sbjct: 46 NWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAW 81
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 115 KYRFVFRFVSVHYKIENIRPPKNKY-SVVKRNNH 213
KYRFVF+F S + ++ K KY ++++R++H
Sbjct: 769 KYRFVFKF-SPSQPLSSLGKNKEKYDALLERSSH 801
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 324 NKVQTSNIAFR*NILFDILISFLTNLVDKWVKIVAFAMVIPLYY--GIFIFRRPNVFNFV 151
+K TSN FR +I NLV+ + + + + LY +++F RP V +
Sbjct: 361 SKYNTSNPMFR---HLSSMIRTRQNLVETYPEFT-YVLSFQLYIDDSVYVFTRPGVIIAI 416
Query: 150 MNRNKTKYKSILIGLR 103
N T + I L+
Sbjct: 417 SNEGSTSSFKVEIDLK 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,941
Number of Sequences: 5004
Number of extensions: 65317
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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