Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0116
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    32   0.37 
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032...    29   3.5  
01_06_0054 - 26027072-26028463                                         28   6.1  
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403...    28   6.1  
09_01_0100 + 1523835-1524611                                           28   8.0  
04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148...    28   8.0  

>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 380 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANY 508
           G   G T+ + +C SC YK        +++  +P I VI  NY
Sbjct: 96  GAGYGTTVELQFCASCSYKGTAMTMKRMLETSFPGIHVILHNY 138


>01_06_1235 -
           35602548-35602594,35603057-35603060,35603186-35603290,
           35604274-35604589,35605898-35605968,35606076-35606270
          Length = 245

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 380 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANY 508
           G + G T+ + +C SC Y+        +++  +P I V+  NY
Sbjct: 71  GPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGIHVVLENY 113


>01_06_0054 - 26027072-26028463
          Length = 463

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
 Frame = +2

Query: 134 VLFLFITKLKTFGRLKINIP**RGITIAKATIFTHLSTKFVR--KDISMSNN-------- 283
           +LFL +T L T     + +P  RG+ +++   F   + K++R  +D S S++        
Sbjct: 117 LLFLGVTGLMTTLYRLLPLPVVRGVQLSQGLSFAFTAVKYIRYVQDFSRSSSASTSVPRP 176

Query: 284 MFYLNAMLLVCTLLFTLTHINADSDEGSISKIGTS 388
           +  L+ ++L    L  +       D+  +++ GTS
Sbjct: 177 LLGLDGLVLALAALLFIILATGSGDDEDVNRDGTS 211


>01_01_0548 -
           4033077-4033349,4034007-4034261,4034362-4034533,
           4034616-4034839,4035168-4035332,4035591-4035881,
           4035971-4036303,4036391-4036485,4036570-4036689,
           4036778-4036934,4037176-4037279,4037383-4037543,
           4037636-4037952,4038655-4038936,4039020-4039321,
           4039453-4039543,4040227-4040280,4040367-4040684,
           4041008-4041092,4041178-4041266,4041474-4041594,
           4042136-4042431
          Length = 1434

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 517 GFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSW 639
           G NM ++   G   +LV+M IL G   F    +  PAWW W
Sbjct: 678 GRNMIVANTFGSFALLVVM-ILGG---FIITKESIPAWWIW 714


>09_01_0100 + 1523835-1524611
          Length = 258

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 112 NKYRFVFRFVSVHYKIENIRPP-KNKYSVVKRNNHCESNDLHPF 240
           N Y   F+     +K +++ P     Y+ +KR  HCE+ +L PF
Sbjct: 82  NLYLVAFKVQGKWHKFKDLTPKIAPDYASIKRKKHCEAKNL-PF 124


>04_04_1379 +
           33113374-33113529,33114046-33114143,33114811-33114880,
           33116668-33116800,33116981-33118940,33119016-33119076,
           33119554-33120057
          Length = 993

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 567 HHVYTQRCEYFCLVEQTTTCLVELVP*KQAVCMHDDVLFSK 689
           HH+ +   E    +E++  CL E +   QA C+  D + +K
Sbjct: 102 HHLLSLEKEKIARLERSLQCLNEQISFAQAECVEKDAILAK 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,429,242
Number of Sequences: 37544
Number of extensions: 346243
Number of successful extensions: 861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)