BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0116 (690 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 32 0.37 01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032... 29 3.5 01_06_0054 - 26027072-26028463 28 6.1 01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 28 6.1 09_01_0100 + 1523835-1524611 28 8.0 04_04_1379 + 33113374-33113529,33114046-33114143,33114811-331148... 28 8.0 >05_05_0155 + 22787658-22787930,22788029-22788096,22789600-22789915, 22790207-22790323 Length = 257 Score = 32.3 bits (70), Expect = 0.37 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +2 Query: 380 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANY 508 G G T+ + +C SC YK +++ +P I VI NY Sbjct: 96 GAGYGTTVELQFCASCSYKGTAMTMKRMLETSFPGIHVILHNY 138 >01_06_1235 - 35602548-35602594,35603057-35603060,35603186-35603290, 35604274-35604589,35605898-35605968,35606076-35606270 Length = 245 Score = 29.1 bits (62), Expect = 3.5 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +2 Query: 380 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANY 508 G + G T+ + +C SC Y+ +++ +P I V+ NY Sbjct: 71 GPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGIHVVLENY 113 >01_06_0054 - 26027072-26028463 Length = 463 Score = 28.3 bits (60), Expect = 6.1 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 10/95 (10%) Frame = +2 Query: 134 VLFLFITKLKTFGRLKINIP**RGITIAKATIFTHLSTKFVR--KDISMSNN-------- 283 +LFL +T L T + +P RG+ +++ F + K++R +D S S++ Sbjct: 117 LLFLGVTGLMTTLYRLLPLPVVRGVQLSQGLSFAFTAVKYIRYVQDFSRSSSASTSVPRP 176 Query: 284 MFYLNAMLLVCTLLFTLTHINADSDEGSISKIGTS 388 + L+ ++L L + D+ +++ GTS Sbjct: 177 LLGLDGLVLALAALLFIILATGSGDDEDVNRDGTS 211 >01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533, 4034616-4034839,4035168-4035332,4035591-4035881, 4035971-4036303,4036391-4036485,4036570-4036689, 4036778-4036934,4037176-4037279,4037383-4037543, 4037636-4037952,4038655-4038936,4039020-4039321, 4039453-4039543,4040227-4040280,4040367-4040684, 4041008-4041092,4041178-4041266,4041474-4041594, 4042136-4042431 Length = 1434 Score = 28.3 bits (60), Expect = 6.1 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 517 GFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSW 639 G NM ++ G +LV+M IL G F + PAWW W Sbjct: 678 GRNMIVANTFGSFALLVVM-ILGG---FIITKESIPAWWIW 714 >09_01_0100 + 1523835-1524611 Length = 258 Score = 27.9 bits (59), Expect = 8.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +1 Query: 112 NKYRFVFRFVSVHYKIENIRPP-KNKYSVVKRNNHCESNDLHPF 240 N Y F+ +K +++ P Y+ +KR HCE+ +L PF Sbjct: 82 NLYLVAFKVQGKWHKFKDLTPKIAPDYASIKRKKHCEAKNL-PF 124 >04_04_1379 + 33113374-33113529,33114046-33114143,33114811-33114880, 33116668-33116800,33116981-33118940,33119016-33119076, 33119554-33120057 Length = 993 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/41 (29%), Positives = 21/41 (51%) Frame = +3 Query: 567 HHVYTQRCEYFCLVEQTTTCLVELVP*KQAVCMHDDVLFSK 689 HH+ + E +E++ CL E + QA C+ D + +K Sbjct: 102 HHLLSLEKEKIARLERSLQCLNEQISFAQAECVEKDAILAK 142 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,429,242 Number of Sequences: 37544 Number of extensions: 346243 Number of successful extensions: 861 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 861 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1756684372 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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