Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0116
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  

>SB_42245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = +1

Query: 556 KMLVIMCILSG--VNIFAWLNKPQPAWWSWCLENKLYACMMMFFLAN 690
           K++ I  I+ G  V +F  LN   P  ++W + NK+Y+C+++FFL+N
Sbjct: 3   KLIAIGIIMLGEQVRLFENLNITPPEIYTWAVNNKMYSCILIFFLSN 49


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 645  KAPTPPSRLWFVQPSKNIHTAEYTHDDQHFAKTNNS**IHVKTR 514
            + P+P +   F  P  NI  A+ TH+ QH   T  S  +HV+TR
Sbjct: 2550 EGPSPVNTCGFRVPKMNIQGAKATHEVQHL--TLLSVELHVRTR 2591


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,382,998
Number of Sequences: 59808
Number of extensions: 449475
Number of successful extensions: 1191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)