Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0116
         (690 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061409-1|AAL28957.1|  198|Drosophila melanogaster LD33828p pro...    71   1e-12
AE014134-842|AAF52202.1|  198|Drosophila melanogaster CG3887-PA ...    71   1e-12

>AY061409-1|AAL28957.1|  198|Drosophila melanogaster LD33828p
           protein.
          Length = 198

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +2

Query: 296 NAMLLVCTLLFTLTHINADSD-EGSISKIGTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQ 472
           N  LLV  L      + A+ + E  ++K G ++  TM   YCYSCGY+K FEDY G++ +
Sbjct: 8   NVALLVLCLCAGYALVFAEGEKEIPVTKFGQNIAPTMTFLYCYSCGYRKAFEDYVGLLGE 67

Query: 473 KYPEISVIGANY 508
           KYP+I V G NY
Sbjct: 68  KYPQIQVNGGNY 79



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 29/60 (48%), Positives = 42/60 (70%)
 Frame = +1

Query: 511 PPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLAN 690
           PPG N YLS++I   K+++I+ ++S V+ F +L    P+WWS    NK+YACMM+FFL N
Sbjct: 81  PPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGN 140


>AE014134-842|AAF52202.1|  198|Drosophila melanogaster CG3887-PA
           protein.
          Length = 198

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +2

Query: 296 NAMLLVCTLLFTLTHINADSD-EGSISKIGTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQ 472
           N  LLV  L      + A+ + E  ++K G ++  TM   YCYSCGY+K FEDY G++ +
Sbjct: 8   NVALLVLCLCAGYALVFAEGEKEIPVTKFGQNIAPTMTFLYCYSCGYRKAFEDYVGLLGE 67

Query: 473 KYPEISVIGANY 508
           KYP+I V G NY
Sbjct: 68  KYPQIQVNGGNY 79



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 29/60 (48%), Positives = 42/60 (70%)
 Frame = +1

Query: 511 PPGFNMYLSRIIGFGKMLVIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMFFLAN 690
           PPG N YLS++I   K+++I+ ++S V+ F +L    P+WWS    NK+YACMM+FFL N
Sbjct: 81  PPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGN 140


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,570,239
Number of Sequences: 53049
Number of extensions: 645727
Number of successful extensions: 1501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)