Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0116
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47300.1 68416.m05141 selenoprotein-related contains weak sim...    36   0.025
At5g58640.1 68418.m07348 selenoprotein-related contains weak sim...    34   0.10 
At1g73140.1 68414.m08458 hypothetical protein                          29   2.2  
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    29   2.9  
At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit...    29   3.8  
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con...    28   5.1  
At1g06100.1 68414.m00639 fatty acid desaturase family protein si...    28   5.1  
At2g32540.1 68415.m03975 cellulose synthase family protein simil...    28   6.7  
At3g02600.1 68416.m00251 phosphatidic acid phosphatase family pr...    27   8.9  
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    27   8.9  

>At3g47300.1 68416.m05141 selenoprotein-related contains weak
           similarity to selenoprotein W (Swiss-Prot:P49904)
           [Rattus norvegicus]
          Length = 209

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 380 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANY 508
           G   G+T+ I +C SC YK        +++  +P + V+ ANY
Sbjct: 52  GVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANY 94


>At5g58640.1 68418.m07348 selenoprotein-related contains weak
           similarity to Selenoprotein W (Swiss-Prot:P49904)
           [Rattus norvegicus]
          Length = 228

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 392 GHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANY 508
           G+T+ I +C SC YK        +++  +P + VI ANY
Sbjct: 73  GNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANY 111


>At1g73140.1 68414.m08458 hypothetical protein
          Length = 413

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 546 WFWQNVGHHVYTQR-CEYFCLVEQTT 620
           W W NV + +YT++ C Y  LV+QTT
Sbjct: 64  WVWDNVSYPLYTEKSCPY--LVKQTT 87


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 565 VIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMF 678
           V++ ++ G++I++   +   +W+SW L + L +C+ MF
Sbjct: 452 VLLLLVIGLSIYSLAYERHKSWYSWIL-SSLTSCVYMF 488


>At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At5), putative E3 ubiquitin ligase; similar
           to Skp1 GI:4959710 from [Medicago sativa]
          Length = 153

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 35  LIIKKC--HLKNKIKEALKQWFLKFLKPISIDLYF 133
           ++I  C  H+K+K +E LK+W   F+K I   + F
Sbjct: 53  IVIDYCEKHVKSKEEEDLKEWDADFMKTIETTILF 87


>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
           contains Pfam profile PF05602: Cleft lip and palate
           transmembrane protein 1 (CLPTM1)
          Length = 590

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 565 VIMCILSGVNIFAWLNKPQPAWWSWCLENKLYACMMMF 678
           V++ ++ G +I++   +   +W+SW L + L +C+ MF
Sbjct: 450 VLLLLVVGFSIYSLAYERHKSWYSWIL-SSLTSCVYMF 486


>At1g06100.1 68414.m00639 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 38  IIKKCHLKNKIKEALKQWFLKFLK 109
           I +KC  +N + +  +QWF +FLK
Sbjct: 148 IREKCGRRNNVMDLKQQWFYRFLK 171


>At2g32540.1 68415.m03975 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 472 LLYNSCIVFKYLFVATRITVIDIHCMPDTCTNFTNAAF 359
           LL+NS +  K +++   IT++ IHC+  T   F N  F
Sbjct: 558 LLHNSALFPKGVYLGIIITLVGIHCL-YTLWEFMNLGF 594


>At3g02600.1 68416.m00251 phosphatidic acid phosphatase family
           protein / PAP2 family protein similar to phosphatidic
           acid phosphatase [Mus musculus] GI:1487873; contains
           Pfam profile: PF01569 phosphatase PAP2 superfamily
          Length = 364

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 288 NILFDILISFLTNLVDKWVKIVAFAMVIPLYYGIFI-FRRPNVFN 157
           +++ D+     +N V  W  +  +AM++PL   IFI FRR +V++
Sbjct: 102 DMMTDLSYPLKSNTVPIW-SVPVYAMLLPLVIFIFIYFRRRDVYD 145


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 472 LLYNSCIVFKYLFVATRITVIDIHCM 395
           LL+NS +  K L++   +T++ IHC+
Sbjct: 558 LLHNSTLFPKGLYLGITVTLVGIHCL 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,219
Number of Sequences: 28952
Number of extensions: 311439
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)