Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0115
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    98   1e-21
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    61   2e-10
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    57   2e-09
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    48   1e-06
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    44   3e-05
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.1  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
 Frame = +1

Query: 229 KGCSSNLSRCRGSGMQVQIQQLGPGMIQQIQTVCCECRGQKEIVDPKDRCKVCEGRKIVR 408
           +G   + + C GSG++   + +GP MIQ++Q  C +C G  E +  +DRCK C+G K++ 
Sbjct: 147 EGSVKSCASCNGSGVKFITRAMGP-MIQRMQMTCPDCNGAGETIRDEDRCKECDGAKVIS 205

Query: 409 DRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEPATSL-LFWMKRNMEYLNVLEMISFYA* 585
            RKIL VHV+KGM +GQKIVF  EG+Q P + P   + +   K +  +    + + + A 
Sbjct: 206 QRKILTVHVEKGMHNGQKIVFKEEGEQAPGIIPGDVIFVIDQKEHPRFKRSGDHLFYEAH 265

Query: 586 T*NLWKLC---VVSKK**GLWMKETFVITVMPGEVTKHGEVKCVLNEGM 723
              L  L    +V +     W+     I ++PGE  +  E+K +  +GM
Sbjct: 266 VDLLTALAGGQIVVEHLDDRWL----TIPIIPGECIRPNELKVLPGQGM 310



 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +3

Query: 510 DLIIVLDEKEHGIFKRSGNDLILRMNIELVEALCGFQKVIRTLDER 647
           D+I V+D+KEH  FKRSG+ L    +++L+ AL G Q V+  LD+R
Sbjct: 240 DVIFVIDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDR 285



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 116 DVIHQLSVTLEELYCGTVRKLTLQKNVIXXXXXXXXXXXXAVQTC 250
           D++H + VTLE+LY G   KL LQK VI            +V++C
Sbjct: 109 DLVHTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSC 153


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
 Frame = +1

Query: 256 CRGSGMQVQIQQLGPGMIQQIQTVCCECRGQKEIVDPKDRCKVCEGRKIVRDRKILEVHV 435
           C GSG +V    + PG  QQ++  C  C G    +  K +C  C+G ++    +  ++ V
Sbjct: 175 CGGSGFRVIEHMIAPGFRQQMRMPCNACNGNGRTI--KHKCPRCKGERVAEVVESFDIKV 232

Query: 436 DKGMVDGQKIVFSGEGDQEPNLEPATSLLF---------WMKRNMEYLNVLEMISFYA*T 588
             G  +G +I F G+ D+ P +E    ++          W +++ + L   E IS     
Sbjct: 233 PAGAPEGYRIGFRGKADEIPGMEAGDIIVILEAAGGDYGWTRKDND-LYRKETISVREAL 291

Query: 589 *NLWKLCVVSKK**GLWMKETFVITVMPGEVTKHGEVKCVLNEGMPMY 732
              WK  +  +K  G +M+    +    GEV   GE + V N+GMP+Y
Sbjct: 292 LGNWKRKI--QKLDGSFME----VKRSAGEVVHPGETERVKNQGMPIY 333


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 25/89 (28%), Positives = 45/89 (50%)
 Frame = +1

Query: 256 CRGSGMQVQIQQLGPGMIQQIQTVCCECRGQKEIVDPKDRCKVCEGRKIVRDRKILEVHV 435
           C G G++  ++ +GP  +   Q +C  C G+      KDRCK C+G   V ++++L   V
Sbjct: 167 CDGKGVKQHLKHVGPHHVTNSQVICDTCNGKGVSFRGKDRCKHCKGSGTVPEQRMLSFFV 226

Query: 436 DKGMVDGQKIVFSGEGDQEPNLEPATSLL 522
           ++   +  KI+  G  D+   + P   +L
Sbjct: 227 NRSAKENDKIIQRGMADEAYGITPGDVIL 255



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
 Frame = +3

Query: 510 DLIIVLDEKEHGIFKRSGNDLILRMNIELVEALCGFQKVI-RTLDERDICY 659
           D+I+ L +K H +F+R G+DL  ++ I L EAL GF +VI  TLD R + Y
Sbjct: 252 DVILQLHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTTLDGRGLEY 302


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +3

Query: 510 DLIIVLDEKEHGIFKRSGNDLILRMNIELVEALCGFQKVIRTLDERDI 653
           D+  VL EK H +F RSG+DL +++ + L EAL GF K I T+D + +
Sbjct: 276 DIQFVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFSKQISTIDGKKL 323



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +1

Query: 391 GRKIVRDRKILEVHVDKGMVDGQKIVFSGEGDQEPN 498
           G+ +  DR ILE+ V  G   G KI F+GEGD++P+
Sbjct: 237 GQSVKADR-ILEIKVKPGWKAGTKIKFAGEGDEKPD 271


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +1

Query: 256 CRGSGMQVQIQQLGPGMIQQIQTVCCECRGQKEIVDPKDRCKVCEGRKIVRDRKILEVHV 435
           C+G+G ++    + P     +QT C  C G    + P   C+ C G   VR+RK + + +
Sbjct: 260 CKGTGQRLHF--IPPSF--HMQTTCDSCGGTGTTIPPNSACRSCMGSGTVRERKTVSIDI 315

Query: 436 DKGMVDGQKIVFSGEGD 486
             G+ D   +   G G+
Sbjct: 316 PPGIDDNTVLRVMGAGN 332


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 WLWYASTNSTARPGYDTADSNSMLRMPW 344
           W+ YA+ N T    YD  D +S +  PW
Sbjct: 642 WVLYANRNDTHLWSYDCTDEDSAIIGPW 669


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 521 NNEVAGSRFGS*SPSPLNTIF 459
           NN+  G  FGS S +P NT+F
Sbjct: 20  NNQQTGGLFGSNSNTPGNTLF 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,623
Number of Sequences: 5004
Number of extensions: 66646
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)