Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0115
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   1e-38
SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)                 103   2e-22
SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13)                38   0.012
SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_19319| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)              36   0.048
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)                  34   0.15 
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)                 29   5.5  
SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score =  157 bits (380), Expect = 1e-38
 Identities = 81/182 (44%), Positives = 111/182 (60%), Gaps = 1/182 (0%)
 Frame = +1

Query: 229 KGCSSNLSRCRGSGMQVQIQQLGPGMIQQIQTVCCECRGQKEIVDPKDRCKVCEGRKIVR 408
           +GC  +   C GSGM V+I ++ PGM+QQIQTVC +C G+ E +  KDRCK C G+K+VR
Sbjct: 204 EGCVESCQTCHGSGMYVRINRIAPGMVQQIQTVCRDCGGKGEKIPEKDRCKNCHGKKVVR 263

Query: 409 DRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEPATSLLFWMKRNMEYLNVLEMISFYA*T 588
           +RKILEVH+DKGM DGQK  FSGEGDQ+P +EP   ++   ++                 
Sbjct: 264 ERKILEVHIDKGMKDGQKRTFSGEGDQDPGIEPGDIVIVLDEQEHPVFRRRGADLIIQME 323

Query: 589 *NLWK-LCVVSKK**GLWMKETFVITVMPGEVTKHGEVKCVLNEGMPMYKNPF*KRTTDV 765
            +L + LC   K    L  K T ++T  PG V K G++K + +EGMP ++NPF K    +
Sbjct: 324 IDLVESLCGFQKTITTL-DKRTLLVTSKPGNVIKPGDMKSIEDEGMPHHRNPFHKGRLLI 382

Query: 766 QF 771
           QF
Sbjct: 383 QF 384



 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 30/48 (62%), Positives = 41/48 (85%)
 Frame = +3

Query: 510 DLIIVLDEKEHGIFKRSGNDLILRMNIELVEALCGFQKVIRTLDERDI 653
           D++IVLDE+EH +F+R G DLI++M I+LVE+LCGFQK I TLD+R +
Sbjct: 298 DIVIVLDEQEHPVFRRRGADLIIQMEIDLVESLCGFQKTITTLDKRTL 345



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 28/70 (40%), Positives = 34/70 (48%)
 Frame = +2

Query: 41  PMDLFDMXXXXXXXXXXXXXXXXXXDVIHQLSVTLEELYCGTVRKLTLQKNVIXXXXXXX 220
           PMD+FDM                  D++HQL VTLEELY G  R+L LQKNVI       
Sbjct: 143 PMDIFDMFFGTGRAAHQGERRGK--DMVHQLRVTLEELYNGATRQLALQKNVICSKCDGR 200

Query: 221 XXXXXAVQTC 250
                 V++C
Sbjct: 201 GGKEGCVESC 210


>SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
          Length = 386

 Score =  103 bits (247), Expect = 2e-22
 Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
 Frame = +1

Query: 256 CRGSGMQVQIQQLGPGMIQQIQTVCCECRGQKEIVDPKDRCKVCEGRKIVRDRKILEVHV 435
           C+G G++V I+ +GPGM+QQ+Q++C +C G+ +      R  +  G          +VHV
Sbjct: 141 CKGRGVKVTIKPIGPGMVQQMQSMCHDCSGEDDDGKENIRLAIPNGGDAFNT---FQVHV 197

Query: 436 DKGMVDGQKIVFSGEGDQEPNLEPATSLLFWMKRNMEYLNVLEMISFYA*T*NLWK-LC- 609
           DKGM DGQKI F GEGDQEPN+EP   +L   +++ +  +   M  F   T  L + LC 
Sbjct: 198 DKGMSDGQKITFRGEGDQEPNVEPGDVILVIQQKDHDLFSRQGMDLFMTKTVTLAEALCG 257

Query: 610 --VVSKK**GLWMKETFVITVMPGEVTKHGEVKCVLNEGMPMYKNPF*KRTTDVQF 771
             +V K   G       +I    G + + G ++ ++ EGMP Y++PF K    ++F
Sbjct: 258 FHMVVKHLDG----RDLLIRYHAGNIIEPGCIRGIVGEGMPAYRHPFDKGNLYIKF 309


>SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13)
          Length = 278

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
 Frame = +1

Query: 403 VRDRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEPATSLLFWM--KRNMEYLNVLEMISF 576
           +R+ KIL++ V  G   G KI F  EGD +P +  A+ ++F +  K +  +    E    
Sbjct: 136 IREDKILQIEVKPGWKAGTKITFPREGDMKPGI-IASDIIFIIADKPHQFFKRDSENNLI 194

Query: 577 YA*T*NLWKL---CVVSKK**GLWMKETFVITVMPGEVTKHGEVKCVLNEGMPMYKNPF* 747
           Y     L      CV+      +   +  V+++   EV + G  K +  EG+P+ KNP  
Sbjct: 195 YVSKLTLKDALVGCVIQ-----VPTIDGRVLSIQVNEVIRPGMQKRIQGEGLPLSKNPIE 249

Query: 748 KRTTDVQF 771
           +    V F
Sbjct: 250 RADLIVTF 257



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 510 DLIIVLDEKEHGIFKR-SGNDLILRMNIELVEALCGFQKVIRTLDER 647
           D+I ++ +K H  FKR S N+LI    + L +AL G    + T+D R
Sbjct: 172 DIIFIIADKPHQFFKRDSENNLIYVSKLTLKDALVGCVIQVPTIDGR 218



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 131 LSVTLEELYCGTVRKLTLQKNVI 199
           L V+LEELY G+VRKL +   V+
Sbjct: 107 LPVSLEELYIGSVRKLRINHQVL 129


>SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +1

Query: 409 DRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEPATSLLFWMK 534
           + KIL V+V KG   G +I F  EGDQ+P   PA  ++F +K
Sbjct: 205 EEKILTVNVKKGWKAGTRITFPKEGDQKPGRIPA-DIVFTIK 245


>SB_19319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 358 VDPKDRCKVCEGRKIVRDRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEP 507
           + P++ C  C     V   KILEV V++GM   Q+  F  EG+   + EP
Sbjct: 8   MSPEEICDECPAVTYVNKEKILEVEVEQGMKHEQEYPFVSEGEPHIDGEP 57



 Score = 31.9 bits (69), Expect = 0.59
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 510 DLIIVLDEKEHGIFKRSGNDLILRMNIELVEALCGFQKVIRTLDE 644
           DL   + E  H  F R G DL   + I L +AL GF+  I  LD+
Sbjct: 59  DLKFKIIELRHKRFTRKGKDLYANVTITLNDALSGFEMDIPHLDK 103


>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
          Length = 351

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 409 DRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEPA 510
           + KIL V+V  G  +G KI F  EGD++P + PA
Sbjct: 210 EEKILTVNVKPGWKEGTKITFPKEGDRKPGVIPA 243


>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
          Length = 399

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +1

Query: 403 VRDRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEPATSLLFWMK 534
           +RD KIL ++V +G     KI F  EGDQ PN  PA  ++F +K
Sbjct: 185 IRD-KILTINVKRGWRASTKITFPKEGDQGPNNIPA-DIVFIVK 226



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 510 DLIIVLDEKEHGIFKRSGNDLILRMNIELVEAL 608
           D++ ++ +K H IFKR  ++LI    + L + L
Sbjct: 220 DIVFIVKDKPHPIFKRDNDNLIYIATVPLGKVL 252


>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 388 EGRKIVRDRKILEVHVDKGMVDGQKIVFSGEGDQEPNLEPATSLLFWMK 534
           +G     + K L V++  G   G +IVF  EGD+ P  +P + ++F +K
Sbjct: 195 DGLSSKTEEKTLIVNIKPGWKQGTRIVFPREGDRRPGKDP-SDIVFKIK 242


>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +1

Query: 241 SNLSRCRGSGMQVQIQQLGPGMIQQIQTVCCECRGQKEIVDPKDRCKVCEGRKIVRDRKI 420
           S  + C G+G +     +  G    +++ C +C GQ  I+     C+ C G+  V + + 
Sbjct: 217 SKCTTCNGTGQET----VNTGFFY-MKSTCRKCAGQGYIISTP--CRKCRGKGRVNESRK 269

Query: 421 LEVHVDKGMVDGQKI 465
           + V V  G+ +GQ +
Sbjct: 270 ITVPVPAGVDNGQTV 284


>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
          Length = 458

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +1

Query: 307 IQQIQTVCCEC-RGQKEIVDPKDRCKVCEGRKIVRDRKILEVHVDKGMVDGQK 462
           ++QI+ +  EC +G+K+  D KDR +  EGR++   +++  +  +  M++ +K
Sbjct: 266 LRQIKMLSGECLQGKKDATDLKDRLEQEEGRRLDSRQEMNAIKQNIIMLESEK 318


>SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 420 NFTITYYFTSLTDFATVFRIYNLFLST 340
           ++ IT+Y   + DF T+ R+Y+ FL+T
Sbjct: 263 SWLITWYGHVIQDFDTIVRLYDFFLAT 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,929,764
Number of Sequences: 59808
Number of extensions: 505510
Number of successful extensions: 1276
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)