Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0115
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 516 IIVLDEKEHGIFKRSGNDLILRMNIELVEAL 608
           + +LD  E G  +   N  ILR N++  E L
Sbjct: 781 LAILDFHESGFMESLDNHWILRSNVQQCEQL 811


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 475 GEGDQEPNLEPATSLLFWMKRNMEYLNVLEMIS 573
           G GD   N E     L+ MK N  Y+N    IS
Sbjct: 525 GNGDPPENGEAFAQNLYAMKMNETYINSGNKIS 557


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 586 FMRKMRSFPERLNIP 542
           +  KM  FPERL +P
Sbjct: 595 YSEKMLGFPERLILP 609


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 586 FMRKMRSFPERLNIP 542
           +  KM  FPERL +P
Sbjct: 595 YSEKMLGFPERLILP 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,073
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)