Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0113
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    65   1e-11
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    28   1.2  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.8  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    25   8.5  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   8.5  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   8.5  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
 Frame = +2

Query: 305 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 484
           SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQA+  L EP  
Sbjct: 73  SNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVG 132

Query: 485 TIRVRQTDRLWWSPCSEKLNKTTRIRSRRTLC*KSTLRT--FCRPTPVVVIELVAARGRI 658
            +  RQ D         K  +  + ++  ++  +    T  F   + +  + LV   G+I
Sbjct: 133 IVYSRQRDAEIVKAAIPKATEVLKSKN-GSIDYELDAETDDFLNDSVLGGVVLVGLGGKI 191

Query: 659 KISNTLESRLELIAQQLLPEIRNAL 733
           ++ NTL +RLE++ ++ LPEIR  L
Sbjct: 192 RVDNTLRARLEIVKEEALPEIRRLL 216


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 5   TSFPEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 136
           T+ P+ V NFL+L RP+ VL   +  +S   +    +E T++A D
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 353 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 478
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -3

Query: 511 PVGLTDADGDSGFHELEESLHNKCDQQL*VQFGVLWH 401
           P   T+ D + G+ +L+E + +  +     +FG+ W+
Sbjct: 9   PTTTTEEDDEEGYEKLKEEMGSALNNLTNGKFGLFWN 45


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 484 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 308
           +S F  +EESL  K   +    F  + +  S ++   I+ I Y I THF     S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 365 YVRDLHALSVPSDEL 321
           +V DLHAL+VP D L
Sbjct: 56  FVADLHALTVPQDPL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,013
Number of Sequences: 5004
Number of extensions: 48458
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)