Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0113
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 57 2e-08
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 55 5e-08
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 47 1e-05
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 3.8
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389... 29 5.1
09_02_0115 + 4413714-4414475 28 6.7
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 28 8.8
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 28 8.8
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 56.8 bits (131), Expect = 2e-08
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 15/158 (9%)
Frame = +2
Query: 305 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 484
S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ L +L EP V
Sbjct: 71 SMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAV 130
Query: 485 TIRVRQ-----TDRLWWSPCSEKLNKTTRIRSRRTLC*KSTLRTFCRPTPVVV------- 628
+R R+ + + S +E +K + L + P+P
Sbjct: 131 LLRCRKEDHHHVESVLHSAKNEYASKA-EVHHPEILVDHDV---YLPPSPSSHDSHERFC 186
Query: 629 ---IELVAARGRIKISNTLESRLELIAQQLLPEIRNAL 733
+ L + G+I NTL++RLE++ ++ LPEIR L
Sbjct: 187 SGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLL 224
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +3
Query: 96 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIME 254
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI +
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQ 53
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 55.2 bits (127), Expect = 5e-08
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 22/165 (13%)
Frame = +2
Query: 305 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV----------- 451
S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 71 STQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQI 130
Query: 452 QALFQLMEPTVTIRVRQTDRLWWSPCSEKLNK-----------TTRIRSRRTLC*KSTLR 598
Q+L +L EP+V +R R+ DR E K I + L T R
Sbjct: 131 QSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGKVYLPPPKTAR 190
Query: 599 TFCRPTPVVVIELVAARGRIKISNTLESRLELIAQQLLPEIRNAL 733
P + + + G+I NTL++R+E+ +Q LPEIR L
Sbjct: 191 DAHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKL 235
Score = 35.9 bits (79), Expect = 0.033
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 96 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIME 254
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I +
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQ 53
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 47.2 bits (107), Expect = 1e-05
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Frame = +2
Query: 305 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ---------- 454
S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 72 SKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPEQ 131
Query: 455 ALFQLMEPTVTIRVRQTDR-----LWWSPCSEKLNKTT----RIRSRRTLC*KSTLRTFC 607
+L +L EP V +R R+ DR + S +E +K I R + +
Sbjct: 132 SLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHYE 191
Query: 608 RPTPVVV--IELVAARGRIKISNTLESRLELIAQQLLPE 718
P + L + G+I NTL++RLE++ ++ LPE
Sbjct: 192 AHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 96 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 248
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRI 52
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 323 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 457
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>07_03_0856 -
22037345-22037665,22037962-22038108,22038201-22038978,
22039092-22039384,22039663-22039758
Length = 544
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +1
Query: 406 KGHQTVLRAAGHTYCAGSLPAHGTHCHHPRPSNRQALVESLLGKAQQDYKNKIKKDVVLK 585
K HQ R + GS+P+ C H S V+ +LGK QD+ + + +
Sbjct: 325 KLHQFRYRGPSISMMLGSVPSIEHACLHYEDSRDGESVKYILGKLSQDF--PLLTSLSID 382
Query: 586 VDTENFLSPDTCGG 627
DT +P GG
Sbjct: 383 FDTYELKNPVIPGG 396
>09_02_0115 + 4413714-4414475
Length = 253
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 424 LRAAGHTYCAGSLPAHGTHCHHPRP 498
LR H+ + SLP H HHPRP
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRP 44
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Frame = +1
Query: 409 GHQTVLRAAGH-TYCAGSL---PAHGTHCHHPRPSNRQALVESLLGKAQQDYKNKIKKDV 576
GH +++R G T S+ P HG++ P P ++ + + YK +
Sbjct: 178 GHGSIMRGGGGMTPPRSSIDASPYHGSYSRSPAPQGSSGGLQEVTRAGNEWYKKGHYGEA 237
Query: 577 VLKVDTENFLSPDT--CGGNRAGCSQG 651
+ D L PD+ C NRA G
Sbjct: 238 LRHYDQAVALCPDSAACRSNRAAALIG 264
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 27.9 bits (59), Expect = 8.8
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +1
Query: 421 VLRAAGHTYCAGSLPAHGTHCHHPRPSNRQALVE--SLLGKAQQDYKNKIKKDVVLKVDT 594
++ A G+ Y +G HGT PRP + S GK + KIK D + + +
Sbjct: 93 MMGAPGNGYNSGGGSGHGTGAGAPRPMLNGGGNDRNSSAGKGGEVNHTKIKPDGIPRFTS 152
Query: 595 ENFLSPDTCGGNRAGCSQGTYQDQQHSGVSLGADR 699
EN +T S +D + G S G R
Sbjct: 153 ENGERKNTTDQKARFNSGRDCRDSRQFGPSGGRGR 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,834,079
Number of Sequences: 37544
Number of extensions: 376634
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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