Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0113
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           48   1e-05
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.55 
SB_46951| Best HMM Match : CUB (HMM E-Value=1.3e-32)                   30   2.2  
SB_6477| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_16140| Best HMM Match : Herpes_US9 (HMM E-Value=5.4)                29   5.2  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   6.8  
SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)               28   9.0  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   9.0  
SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +2

Query: 341 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTD 508
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQD 123



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 523 SLLGKAQQDYKNKIKKDVVLKVDTENFLSPD 615
           ++ G A ++YK + KK++ L VD +NFL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +2

Query: 629 IELVAARGRIKISNTLESRLELIAQQ 706
           IEL A +G+IK+ NTLESRLE++ +Q
Sbjct: 236 IELHAKQGKIKVVNTLESRLEMLGRQ 261


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 326 RLKVLKVREDHVRNVLDEARKRLAEV 403
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_46951| Best HMM Match : CUB (HMM E-Value=1.3e-32)
          Length = 194

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 535 FRAGTPPEPVGLTDADGDSGFHELEESLHNKCDQ 434
           + A  PP+P  + D D D G  +  E+L NK DQ
Sbjct: 136 YAAMAPPKPKSMGDCDFDEGLCKDWENLDNKFDQ 169


>SB_6477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 730 GVTYLRQQLLGDQLQARLQSVADLDTSPGCNQLDYHHRCRATKSSQ 593
           G   L Q  +    +  L+ VAD ++S   NQLD H R R  K +Q
Sbjct: 81  GKKKLVQNAIKRARRGELEEVADKESSDDENQLDEHKRKRKRKRTQ 126


>SB_16140| Best HMM Match : Herpes_US9 (HMM E-Value=5.4)
          Length = 90

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 688 QARLQSVADLDTSPGCNQLDYHHRCRATKSSQ 593
           +  L+ VAD ++S   NQLD H R R  K +Q
Sbjct: 8   RGELEEVADKESSDDENQLDEHKRKRKRKRTQ 39


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 329  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 439
            LK+LK R  H RN   EA+++  E  ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 320  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 430
            QA L+  +  +D+++   D  +KRLA++  + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495


>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 296 SSSEVQPASPSFHSFHNLETLLLDKTA---LFDVELLLGLRIDXXXXXXXXXFDEGHHVL 126
           S S ++  SP+   F NL TL L+KTA   L ++  L G ++D             HH+ 
Sbjct: 262 SESPIENISPTGELFPNLHTLKLNKTAIGRLPNITKLNGTKVDEEEREDAERLFIRHHMD 321

Query: 125 D 123
           D
Sbjct: 322 D 322


>SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)
          Length = 246

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 509 RLWWSPCSEKLNKTTRIRSR 568
           R WWS  SEKL K  R++ R
Sbjct: 216 RSWWSLASEKLRKERRMKPR 235


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 7/36 (19%), Positives = 24/36 (66%)
 Frame = -3

Query: 412 VLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVR 305
           V++  ++ +   ++++T+ +  H Q+L ++++ H+R
Sbjct: 23  VIYTITRTVIGHLQHLTFTVIGHLQHLTSTVIGHLR 58



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 415 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVR 305
           G L H +  +   ++++T  +  H Q+L ++++ H+R
Sbjct: 55  GHLRHLTSTVIGHLQHLTSTVIGHLQHLTSTVIGHLR 91


>SB_18790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 416 KLYSELLVTLIVQALFQLMEPTVTIRVRQTDRLWWSPCSEKLNKTTRIRSRRTL 577
           +L SE+L+ ++V  L  ++    T+ VR   +LW+S  ++       +RSRR +
Sbjct: 170 ELISEILILILVFLLPNII--IFTVYVRLIHKLWFSSDAKSSTNIGLLRSRRAV 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,533,701
Number of Sequences: 59808
Number of extensions: 395107
Number of successful extensions: 1282
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)