Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0113
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...    99   4e-21
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   6.0  
Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF251126-1|AAF71273.1|  487|Caenorhabditis elegans UDP-GlcNAc:a-...    28   7.9  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 61/148 (41%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
 Frame = +2

Query: 302 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPT 481
           +SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q L QL+E  
Sbjct: 72  ASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQGLLQLLEKE 131

Query: 482 VTIRVRQTD-RL---WWSPCSEKLNKTTRIRSRRTLC*KSTLRTFCRPTPVVVIELVAAR 649
           V +R R+ D RL       C + L K     ++  L      + F        +EL A  
Sbjct: 132 VVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVL----DKQNFLPSESAGGVELSARA 187

Query: 650 GRIKISNTLESRLELIAQQLLPEIRNAL 733
           G+IK+S+TLESRLELIA Q++P++R AL
Sbjct: 188 GKIKVSSTLESRLELIANQIVPQVRTAL 215



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 32/53 (60%), Positives = 35/53 (66%)
 Frame = +3

Query: 96  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIME 254
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIME
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIME 55


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 305 KIGSSSEVQPASPSFHSFHNLETLLLDKTALFDVELL 195
           ++GSS+  QP +  F   HN+ + L+ ++ + DV +L
Sbjct: 239 RMGSSTNKQPTNEEFQVIHNMYSELVGRSMVHDVAVL 275


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 305 KIGSSSEVQPASPSFHSFHNLETLLLDKTALFDVELL 195
           ++GSS+  QP +  F   HN+ + L+ ++ + DV +L
Sbjct: 194 RMGSSTNKQPTNEEFQVIHNMYSELVGRSMVHDVAVL 230


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 341 SVPSDELGSACSKIGSSSEVQPASPSFHSFHNLETL 234
           SVP +++ SA S   SSS   PAS S   F NL+ +
Sbjct: 808 SVPPNKMVSAASTPSSSSTPGPASTSVGRFTNLKKI 843


>Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical
           protein C03E10.4 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 496 PSNRQALVESLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGNR 633
           P N Q       G++  D   K+K+D   + +  N+ SPD  G  R
Sbjct: 185 PYNLQLFPTVFPGQSPSDCPEKMKRDKAQETNCSNWSSPDKYGNYR 230


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 380 LHQVHYVRDLHALSVPSDELG 318
           LH++ YV D H + VP D  G
Sbjct: 515 LHKLDYVADAHVVGVPDDRYG 535


>AF251126-1|AAF71273.1|  487|Caenorhabditis elegans
           UDP-GlcNAc:a-6-D-mannoside
           b1,2-N-acetylglucosaminyltransferase II protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 496 PSNRQALVESLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGNR 633
           P N Q       G++  D   K+K+D   + +  N+ SPD  G  R
Sbjct: 185 PYNLQLFPTVFPGQSPSDCPEKMKRDKAQETNCSNWSSPDKYGNYR 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,441
Number of Sequences: 27780
Number of extensions: 289634
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)