Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0113
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.98 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   1.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   6.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   6.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 7/30 (23%), Positives = 21/30 (70%)
 Frame = +1

Query: 505 RQALVESLLGKAQQDYKNKIKKDVVLKVDT 594
           +  +V+++ G     +KN++++++ +K+DT
Sbjct: 55  KSTIVKAISGVQTVRFKNELERNITIKLDT 84


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -1

Query: 213 FRC*TPPRPSHRFLRP----FRWPL 151
           FRC  PP P  RF+ P    FR PL
Sbjct: 148 FRCIGPPTPFPRFIPPNAYRFRPPL 172


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 706 LLGDQLQARLQSVAD--LDT--SPGCNQLDYHHRC 614
           LL DQLQ R QSV    L T  S  CN++    +C
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKC 132


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 706 LLGDQLQARLQSVAD--LDT--SPGCNQLDYHHRC 614
           LL DQLQ R QSV    L T  S  CN++    +C
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKC 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,064
Number of Sequences: 438
Number of extensions: 3232
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)