Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0113
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 62 4e-10
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 60 1e-09
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 59 3e-09
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 29 4.2
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 4.2
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 4.2
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 28 5.6
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 28 5.6
At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing pro... 28 7.4
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 28 7.4
At1g50980.1 68414.m05731 F-box family protein contains F-box dom... 28 7.4
At1g30280.1 68414.m03703 expressed protein contains low similari... 28 7.4
At2g35610.1 68415.m04365 expressed protein 27 9.8
At1g64940.1 68414.m07361 cytochrome P450, putative similar to cy... 27 9.8
At1g63330.1 68414.m07159 pentatricopeptide (PPR) repeat-containi... 27 9.8
At1g20180.1 68414.m02522 hypothetical protein similar to At14a (... 27 9.8
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 62.1 bits (144), Expect = 4e-10
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Frame = +2
Query: 305 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 484
S LN +R+K L+ ++D V + D A K L V D Y +LL +LI+++L +L EP+V
Sbjct: 71 STQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSV 130
Query: 485 TIRVRQTDRLWWSPCSEKLNKTTRIRSRRTLC*KSTL--RTFCRPTPVVVIE-------- 634
+R R+ D+ E K + K T+ + F P P +
Sbjct: 131 LLRCREMDKKVVESVIEDA-KRQYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCS 189
Query: 635 ----LVAARGRIKISNTLESRLELIAQQLLPEIRNAL 733
L + G+I NTL++RL++ +Q LP+IR L
Sbjct: 190 GGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRL 226
Score = 34.7 bits (76), Expect = 0.064
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 96 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIME 254
++DADV KQI+ M+ FI Q FNIE+ +L++ + K+ +
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQ 53
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Frame = +2
Query: 305 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 484
S LN +R+KVL+ ++D V + D+A K L V +D Y +LL LIVQ L +L EP+V
Sbjct: 71 SMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSV 130
Query: 485 TIRVRQTD----RLWWSPCSEKLNKTTRIRSRRTLC*KSTLRTFCRPTPVV--------- 625
+R R+ D E+ ++ + + F P P
Sbjct: 131 LLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAV---DTKIFLPPPPKSNDPHGLHCS 187
Query: 626 -VIELVAARGRIKISNTLESRLELIAQQLLPEIRNAL 733
+ L + G+I NTL++RL++ + LP IR +L
Sbjct: 188 GGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSL 224
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 58.8 bits (136), Expect = 3e-09
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Frame = +2
Query: 305 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKL------YSELLVTLIVQALFQ 466
S LN +R+KVL+ ++D V + +EA K+L +V + Y LL LIVQ L +
Sbjct: 71 SMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLR 130
Query: 467 LMEPTVTIRVRQTD----RLWWSPCSEKLNKTTRIRSRRTLC*KSTLRTFCRPTP----- 619
L EP V +R R+ D SE+ K ++ + + K F P P
Sbjct: 131 LKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKD---IFLPPAPSDDDP 187
Query: 620 -----VVVIELVAARGRIKISNTLESRLELIAQQLLPEIRNAL 733
+ L + G+I NTL++RLE+ + LPEIR +L
Sbjct: 188 HALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSL 230
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -2
Query: 392 GACELHQVHYVRDLHALS----VPSDELGSACSKIGSSSEVQPASPSFHSFHN-LETLLL 228
G+CE+ V + H S + SD L S+ + IG+ +++P FH+ +E L+L
Sbjct: 250 GSCEVADVE-MSSSHVASTSKRILSDSLDSSKADIGNEDDIEPDGDGKWPFHSFVEQLIL 308
Query: 227 D 225
D
Sbjct: 309 D 309
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 38 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 139
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 508 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 541
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 38 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 139
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 505 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 538
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 410 PLALQPGACELHQVHYVRDLHALSVPSDELGSAC 309
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 323 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 356
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 410 PLALQPGACELHQVHYVRDLHALSVPSDELGSAC 309
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 362 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 395
>At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein low similarity to SP|Q01780
Polymyositis/scleroderma autoantigen 2 {Homo sapiens};
contains Pfam profiles PF00570: HRDC domain, PF01612:
3'-5' exonuclease
Length = 838
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 362 VRDLHALSVPSDELGSACSKIGSSSEVQPASPSFHSFHNLE 240
V+ L L + S S++ SSS + P S FH ++N +
Sbjct: 17 VKSLEKL-IDGSSFSSTLSRLSSSSRLIPTSRDFHFYYNFD 56
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 329 LKVLKVREDHVRNVLDEARKRLAEV 403
LK +KV+ED N+LDE ++ L+EV
Sbjct: 54 LKRIKVQEDRGLNLLDEVQQWLSEV 78
>At1g50980.1 68414.m05731 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 266 SFHSFHNLETLLLDKTALFD 207
SF+ F LET++LDK +L D
Sbjct: 124 SFYMFSQLETVILDKVSLMD 143
>At1g30280.1 68414.m03703 expressed protein contains low similarity
to cyclin G-associated kinase GI:1902912 SP|P97874 from
[Rattus norvegicus]
Length = 455
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +1
Query: 484 HHPRPSNRQALVESLLGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGNRAGCSQGTYQD 663
H + +NR VE ++ + ++D + + V++++++ F GG G S D
Sbjct: 255 HAKQRTNRDCKVEEVVVEDEEDEEEEEMSSYVIEINSDRFDRYREEGGGGGGNSDSNDMD 314
Query: 664 QQHSGVSLGADRPAA 708
+ + + RP A
Sbjct: 315 EAIAWAKERSQRPEA 329
>At2g35610.1 68415.m04365 expressed protein
Length = 644
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 353 LHALSVPSDELGSACSKIGSSSEVQPASPSFHSFHNLETLLLDKTALFDVELLL 192
L+ VP ++GS S + +V SP+FH + +L+D F ELL+
Sbjct: 175 LYWKGVPVFDMGSHMSTV----DVGWGSPTFHKMGREKVILIDSVLPFGYELLM 224
>At1g64940.1 68414.m07361 cytochrome P450, putative similar to
cytochrome p450 GI:438242 from [Solanum melongena]
Length = 511
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 362 RNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDRLWWSPCSEKL 541
R ++DE +KR +E KD K Y V V L + P ++ + + + S CSE L
Sbjct: 258 RKIVDERKKRSSEEEKDNKEY----VQSYVDTLLDVELPDEKRKLNEDEIV--SLCSEFL 311
Query: 542 NKTT 553
N T
Sbjct: 312 NAGT 315
>At1g63330.1 68414.m07159 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 558
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 529 LGKAQQDYKNKIKKDVVLKVDTENFLSPDTCGGNRAGCSQGTYQDQQHSGV 681
L KA+Q ++ + KD +DT N L C R +++ H G+
Sbjct: 305 LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 355
>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 391
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -2
Query: 329 DELG-SACSKIGSSSEVQPASPSFHSFHNLET-LLLD 225
D+LG ++CSK+ SSS P+S S SFH+ T LLD
Sbjct: 59 DQLGITSCSKLSSSSP-SPSSSSDLSFHSHFTDYLLD 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,646
Number of Sequences: 28952
Number of extensions: 273822
Number of successful extensions: 810
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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