Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0112
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.0  
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    28   1.4  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   2.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.2  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   5.6  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   9.7  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 332  ITFSQTKKCLLNWKGFLAITYINTIKYSIMKPFSVSTR 219
            + F +TK C+ ++KGF  I+  N +  S++ P   S R
Sbjct: 986  VHFLKTKLCVGSFKGFDIISLENAVFQSLLNPADTSFR 1023


>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 150 NTCMTAPSEDSCVWGSLNHMTHSTC*NTKWFHNR 251
           NT   A  E +  WG+ NH  H  C  ++W + R
Sbjct: 58  NTDSAAAQECTVAWGTCNHAFHFHC-ISRWLNTR 90


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 438  PSRVDSVTKLKTSFFFSAKM*VTRLRNVL---YPPILNKPAEFDHV 566
            P R  ++  LK+  FFSA   VT L N L   Y   L +  E++ V
Sbjct: 1010 PGRESAIASLKSGLFFSAAQGVTFLINALTFWYGSTLMRKGEYNIV 1055


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 229 TLNGFIIEYFIVFM*VMAKKPFQFNKHFFVWLKVIKSTIKAIL*VVLWIQ--R*ISYHSS 402
           ++ G+ I   ++F+  +A  P    + FF W  V+  T   ++  ++W+   R I Y  +
Sbjct: 185 SIYGYFITV-VLFLMTVASLP-SVRRKFFEWFFVLHHTCSVLIIFLIWLHHPRTIVYMKA 242

Query: 403 NYIVY 417
             I+Y
Sbjct: 243 CIIIY 247


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 372 DPTLNKLSFVELHCVHSNFIKVPSRVDSV 458
           DPT      VEL CV+ +F+K  + +D+V
Sbjct: 77  DPTPIFRDTVELLCVYQSFVKKSASLDTV 105


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 91  CVKLXXXXXXSMMYVVMWVGYIFQIFSVV 5
           C KL       +  V+ WVG +   FSV+
Sbjct: 165 CSKLIIKALPLISMVIAWVGVVIAAFSVI 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,286
Number of Sequences: 5004
Number of extensions: 51445
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)