Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0112
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1079 + 9770444-9772756                                           30   1.9  
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353...    29   3.3  

>07_01_1079 + 9770444-9772756
          Length = 770

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 220 RVETLNGFIIEYFIVFM*VMAKKPFQFNKHFFVWLKVIKSTIKAI 354
           R+  L+  +++Y ++ M    K P +F   + +WL  + S   AI
Sbjct: 16  RILALSSLLVQYILLVMAPRRKFPMKFYLRYIIWLAYLSSDALAI 60


>11_06_0295 +
           22033367-22034947,22035030-22035137,22035230-22035370,
           22035576-22035625,22036100-22036168,22036649-22036781,
           22037634-22037747,22037826-22038038,22038387-22038500,
           22038768-22038900,22039304-22039416,22040204-22040284,
           22040397-22040483
          Length = 978

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 116 SFNNFKNFLCQTVNILKQFHDVRCYVGGVYFSNI 15
           S  + KN LCQTVN+   F  +R    G YF+++
Sbjct: 783 SLTSLKNNLCQTVNVRNIFEKLR---AGKYFASV 813


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,545
Number of Sequences: 37544
Number of extensions: 282265
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)