Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0112
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    27   9.0  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    27   9.0  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      27   9.0  

>Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical
           protein F46G10.2 protein.
          Length = 607

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 170 WSSHTRVLSLETGGDVQISFNNFKNFLC-QTVNILKQFHDVR 48
           W+ H  V   ET  D+Q+S+     FLC +T  ++ Q  D R
Sbjct: 210 WAPHVMVELYETTSDIQLSWKAAPQFLCVKTYEVILQNRDGR 251


>U80449-2|AAB37826.1|  112|Caenorhabditis elegans Hypothetical
           protein R10A10.2 protein.
          Length = 112

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 156 CMTAPSEDS-CVWGSLNHMTHSTC*NTKWF--HNRVFYC 263
           C + PS +   VWG  NH  H  C  T+W   +NR   C
Sbjct: 64  CQSEPSAECYVVWGDCNHSFHHCC-MTQWIRQNNRCPLC 101


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
            isoform a protein.
          Length = 1409

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 553  SAGLFKMGGYKTFRNRVTYILAEKKNEVFSFVTESTREGTLM 428
            SAG+ + G + +  + +   LAE K  +F FV    R+  LM
Sbjct: 1014 SAGVGRTGTFISIDSMLDQCLAEDKANIFEFVCNLRRQRNLM 1055


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
            isoform b protein.
          Length = 1444

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 553  SAGLFKMGGYKTFRNRVTYILAEKKNEVFSFVTESTREGTLM 428
            SAG+ + G + +  + +   LAE K  +F FV    R+  LM
Sbjct: 1049 SAGVGRTGTFISIDSMLDQCLAEDKANIFEFVCNLRRQRNLM 1090


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 553  SAGLFKMGGYKTFRNRVTYILAEKKNEVFSFVTESTREGTLM 428
            SAG+ + G + +  + +   LAE K  +F FV    R+  LM
Sbjct: 1014 SAGVGRTGTFISIDSMLDQCLAEDKANIFEFVCNLRRQRNLM 1055


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,362
Number of Sequences: 27780
Number of extensions: 286651
Number of successful extensions: 539
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)