Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0112
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.9  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = -3

Query: 335 LITFSQTKKCLLNWKGFLAITYINTIKYSI 246
           +++ +  ++C  N+K +   +++NTI Y +
Sbjct: 134 IVSGAMAERC--NFKAYCLFSFLNTIVYCV 161


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 504 TRLRNVLYPPILNKPA 551
           T +  V+YPP++  P+
Sbjct: 838 TTMAGVIYPPVIGTPS 853


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 226  ETLNGFIIEYFIVFM*VMAKKPFQF 300
            E  NG I+ Y++ +    ++KP+ F
Sbjct: 1003 EDWNGEILGYYVGYRLSSSEKPYMF 1027


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 377 WIQSTTYNIALIVDLITFSQTKKC 306
           W  ++ + I L   L+ FS+ K C
Sbjct: 72  WTITSYHRINLKCSLVEFSENKNC 95


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 161 HTRVLSLETGGDV 123
           H R++S++ GGD+
Sbjct: 226 HLRIISMQMGGDL 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,698
Number of Sequences: 438
Number of extensions: 3223
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)