Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0112
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16520.1 68418.m01932 expressed protein                             31   0.90 
At1g75400.1 68414.m08759 expressed protein                             28   6.4  

>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 466 SFVTESTREGTLMKFECTQCNSTNDNLF 383
           S+  ++T  G  + F+CT+C  TND ++
Sbjct: 225 SYTCKNTTSGPTVNFKCTKCRLTNDYIY 252


>At1g75400.1 68414.m08759 expressed protein
          Length = 455

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 526 YKTFRNRVTYILAEKKNEVFSFVTESTREGTLMKFE--CTQCNSTN 395
           YK  +NRV     E + + F F     REG  +K E  C+  +S+N
Sbjct: 359 YKRCKNRVVDSYGESECDEFVFQKMGKREGKALKLEASCSSKSSSN 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,061,423
Number of Sequences: 28952
Number of extensions: 252835
Number of successful extensions: 492
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)