Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0111
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    31   0.15 
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.0  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    28   1.4  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    27   1.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   7.4  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   7.4  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.4  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   7.4  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 529 RGQHAAAITHRHGHSGKIQLERKR--QRNRVAASKCRRRK 642
           RG   +   H   ++    ++R+R  +RNR+AASKCR++K
Sbjct: 249 RGTPGSNNVHTASNNETPDMKRRRFLERNRIAASKCRQKK 288


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 399 EALDKLHHGEAVTPLGRRVYADLDRPLERYP 491
           EA + L+H E VT   ++ +   DRP+  YP
Sbjct: 86  EATEALYHAEQVTEERKKHFEHHDRPIGSYP 116


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 601 QRNRVAASKCRRRKLERISKL 663
           +RNR AA KCR+RK + +S L
Sbjct: 480 ERNRQAALKCRQRKKQWLSNL 500


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 601 QRNRVAASKCRRRKLERISKL 663
           +RNR+AASK R++K E I +L
Sbjct: 18  ERNRIAASKFRQKKKEWIKEL 38


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 87  VFAPNASVSLNSLRELYNFFLRLTHVLLP 1
           + APN +  L   REL NFF  L  V +P
Sbjct: 417 IIAPNYTRLLELDRELSNFFKELIEVNIP 445


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 314 RYPYSGSACLISRSSTYGG-TRNVRATFRRSARQAAPRRGSDAARTSSICRFGQAA--RA 484
           R  Y     L++  ST    T   R   RR       ++ S   R+SS   F  A+  ++
Sbjct: 120 RLGYPDDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQS 179

Query: 485 IPHSHREGEPQTVPSAASTPPLS 553
             H+  +     VP  +S+PPLS
Sbjct: 180 SYHTPTKRRKNAVPRKSSSPPLS 202


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 351 AVAPTEEQEMYARPFVEALDKLHHGEAVTPLGR 449
           A    +E E YA+PFVE  +K +   A    G+
Sbjct: 190 ASGKADESEFYAQPFVEEGEKDYDEAAAAKAGK 222


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 458 CRFGQAARAIPHSHREGEPQTVPSAASTPPLSPI 559
           CR   A    P ++  G+   +PS ASTP LSP+
Sbjct: 56  CRKKSAPLHCPSTN--GKTNVLPSYASTPSLSPM 87


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 203 GNVHESLHPFSPRQIYKFEARI 268
           GNV   LHP +P +I K E ++
Sbjct: 400 GNVELKLHPQTPDRIVKVERKV 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,562
Number of Sequences: 5004
Number of extensions: 61956
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)