Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0111
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11) 45 6e-05
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09) 35 0.068
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10) 34 0.090
SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_11068| Best HMM Match : bZIP_1 (HMM E-Value=9.2) 33 0.21
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_9548| Best HMM Match : WD40 (HMM E-Value=0.16) 30 1.9
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 29 3.4
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 3.4
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14) 29 3.4
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 28 5.9
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35) 28 5.9
SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099) 28 7.8
SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012) 28 7.8
>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
Length = 382
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/28 (67%), Positives = 26/28 (92%)
Frame = +1
Query: 580 IQLERKRQRNRVAASKCRRRKLERISKL 663
++ ERK+Q+NRVAASKCRR+KLER ++L
Sbjct: 305 VKRERKKQKNRVAASKCRRKKLEREAQL 332
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/28 (64%), Positives = 26/28 (92%)
Frame = +1
Query: 580 IQLERKRQRNRVAASKCRRRKLERISKL 663
++ ERK+QRNR+A+SKCR+RKLER ++L
Sbjct: 474 VKRERKKQRNRIASSKCRKRKLEREARL 501
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +3
Query: 246 FTNLKLGSPELEKLI--IQNGMVXXXXXXXXXXVLF--PAVAPTEEQEMYARPFVEALDK 413
F+ LKL SP++EK++ +Q+G+ P PT EQ Y+R F EAL
Sbjct: 257 FSLLKLASPDIEKMLMSLQSGISASPTPGSLFNSTAHGPVNPPTTEQ--YSRGFTEALQD 314
Query: 414 LHHGEA 431
LH +A
Sbjct: 315 LHDRQA 320
>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/28 (60%), Positives = 25/28 (89%)
Frame = +1
Query: 580 IQLERKRQRNRVAASKCRRRKLERISKL 663
++ ERK+ RNR+AASKCR+RKLE+ ++L
Sbjct: 133 VKNERKKLRNRLAASKCRKRKLEKEAEL 160
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 503 EGEPQTVPSAASTPPLSPIDMDTQE 577
E + Q VP TPPL PID+D QE
Sbjct: 110 EEQSQVVPH---TPPLPPIDLDLQE 131
>SB_58135| Best HMM Match : bZIP_1 (HMM E-Value=1.4e-09)
Length = 275
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 505 RRAPDGAERGQHAAAITHRHGHSGKIQLERKR---QRNRVAASKCRRRKLERISKL 663
RR G E H A + +LE++R +RN++AA KCR+R+ E I +L
Sbjct: 146 RRVAKGLEEMPHLDAKRPKVEELSPAELEKRRIRRERNKLAAFKCRQRRKEHIQEL 201
>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
Length = 496
Score = 34.3 bits (75), Expect = 0.090
Identities = 12/29 (41%), Positives = 24/29 (82%)
Frame = +1
Query: 577 KIQLERKRQRNRVAASKCRRRKLERISKL 663
++++ R+RQRN+ AAS+CR ++ +R+ +L
Sbjct: 287 ELKIIRRRQRNKQAASRCREKRRQRLEEL 315
>SB_41032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 595 KRQRNRVAASKCRRRKLERISKL 663
+RQRN+VAASKCR ++ E + L
Sbjct: 90 RRQRNKVAASKCRLKRREHVKNL 112
>SB_11068| Best HMM Match : bZIP_1 (HMM E-Value=9.2)
Length = 106
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 595 KRQRNRVAASKCRRRKLERISKL 663
+RQRN+VAASKCR ++ E + L
Sbjct: 82 RRQRNKVAASKCRLKRREHVKNL 104
>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 595 KRQRNRVAASKCRRRKLERISKL 663
+R+RN+VAASKCR+++ + + L
Sbjct: 104 RRERNKVAASKCRQKRKQHVRNL 126
>SB_40320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 317 YPYSGSACLISRSSTYGGTRNVRATFRRSARQAAPRRGSDAARTSSI 457
+PY S+ SRSS GG + + T + + R++ + G +T +
Sbjct: 33 HPYPTSSRASSRSSARGGAKTTKTTKKCTTRKSRTQNGDTTTKTKCV 79
>SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Frame = +1
Query: 112 METTFYDEQYPLSGPVENLK----RPLTLDV-GRGGKRSRIA----APVLSSPDLQI*SS 264
MET FY+E LS +++K PL L++ G KR A L SPDL I S
Sbjct: 1 METAFYEESSLLSSHSKSVKSYDGHPLWLNLYADGTKRDDFAFSDLGDFLRSPDLGISSP 60
Query: 265 DL--LSWK 282
DL L WK
Sbjct: 61 DLENLVWK 68
>SB_9548| Best HMM Match : WD40 (HMM E-Value=0.16)
Length = 417
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +2
Query: 374 RNVRATFRRSARQA--APRRGSDAARTSSICRFGQAARAIPHSHREGEPQTV--PS-AAS 538
R+ RA RRS+RQA A R ART ++A ++ + GE + + PS +
Sbjct: 291 RSQRAQSRRSSRQASRARERARTRARTQRAMYATRSAMSVEETEESGEDEVIVTPSDSED 350
Query: 539 TPPLSPIDMDTQERSNWRE 595
+ ++ E S+W E
Sbjct: 351 EEEWNESSSESSEYSDWTE 369
>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1626
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 448 VEYMPIWTGR*SDTPLPS*RRAPDGAERGQH 540
V+ PI G DTP PS R P G + GQH
Sbjct: 225 VDRNPILQGE--DTPTPSLTRKPQGGQGGQH 253
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 473 AARAIPHSHREGEPQTVPSAASTPPLSPIDMDTQERSNWRERDR 604
+A + P++ P T PSA+S+P +SPI + S D+
Sbjct: 1221 SATSPPYTSASPVPTTTPSASSSPTISPIGSSLAQCSTVDSMDK 1264
>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
Length = 869
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +2
Query: 491 HSHREGEPQT-VPSAASTPPLSPI----DMDTQERSNWRER-DRGIG 613
H R+G+P V +A TPPLSPI D ++ R+R DRG G
Sbjct: 719 HRRRKGQPPNDVRAAWKTPPLSPIRPAQDNPRPPSASRRQRDDRGAG 765
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 479 RAIPHSHREGEPQTVPSAASTPPLSPIDMDTQERSNWRERD 601
R P P+T PS P SPI+ + + + ERD
Sbjct: 472 RGPPPERHARPPRTPPSDHDDRPFSPIEQEANRSNRFSERD 512
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 489 GIALAACPNRHILDVRAASLPRRGAACLALRRKVARTFLVP 367
G+ +AAC +H+ D+RA L R + L L V F VP
Sbjct: 82 GLLMAACKVQHLGDIRANILHPRNVSSLVLH--VVAGFTVP 120
>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
Length = 844
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/94 (23%), Positives = 37/94 (39%)
Frame = +2
Query: 323 YSGSACLISRSSTYGGTRNVRATFRRSARQAAPRRGSDAARTSSICRFGQAARAIPHSHR 502
YS + + S S G R++ + +++ + S A + G + I R
Sbjct: 143 YSRPSDMSSHGSDDGHERHMNGMGSKLSKRKREEKDSGDAPSPQRIENGPDSPPINEKKR 202
Query: 503 EGEPQTVPSAASTPPLSPIDMDTQERSNWRERDR 604
E + S++STP D D R+RDR
Sbjct: 203 SKEAGSPSSSSSTPSSKHRDRDRDRMDRDRDRDR 236
>SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)
Length = 775
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 350 RSSTYGGTRNVRATFRRSARQAAPRRGSDAARTSS 454
R ST GGTR+ ATF+ + A R A+ SS
Sbjct: 210 RLSTKGGTRSAIATFKMTVASPAKSREDTASLRSS 244
>SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 814
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 632 LHLEAATRFLCLFLSSWIFPECPCRWVIAAACWPRSAPS 516
L E T+ +C LS + +C C + AC S+PS
Sbjct: 770 LFSECQTKLVCNLLSRKLMAKCRCTHALMMACKVFSSPS 808
>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
Length = 1348
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 245 SGE-ERTGAAIRERFPPRPTSKVRGLLRFSTGPLR 144
SGE R G+ I+E PPRP K R + + PL+
Sbjct: 380 SGEGPRHGSLIKEE-PPRPPQKTRPMNEYQESPLK 413
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,788,277
Number of Sequences: 59808
Number of extensions: 504717
Number of successful extensions: 1447
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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