Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0109
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 155 4e-39
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 96 5e-21
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 83 3e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 59 5e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 59 5e-10
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 56 5e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 56 5e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 54 1e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 53 3e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 50 3e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 47 2e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 7e-06
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 43 4e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 4e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 6e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 1e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 40 3e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 38 0.002
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 36 0.006
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 35 0.013
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 34 0.017
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 32 0.068
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 4.5
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 26 4.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 5.9
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.9
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 5.9
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 5.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.8
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 7.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 7.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 155 bits (377), Expect = 4e-39
Identities = 74/141 (52%), Positives = 92/141 (65%)
Frame = +2
Query: 254 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPI 613
K +G++ PTPIQ Q WP+AMSG++++ K +Y LPAIVHIN QP + GDGPI
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 614 ALVLAPTRELAQQISASCCRF 676
LVLAPTRELA QI C +F
Sbjct: 198 VLVLAPTRELAVQIQQECTKF 218
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 95.9 bits (228), Expect = 5e-21
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIA 616
++GY++PT IQAQ P SG++++ K K A++LP HI +Q P++ G+GPIA
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIA 494
Query: 617 LVLAPTRELAQQISASCCRF 676
+++ PTRELA QI C F
Sbjct: 495 IIMTPTRELAVQIFRECKPF 514
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 83.4 bits (197), Expect = 3e-17
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Frame = +2
Query: 335 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 515 *PKRVPAKRWAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQISASCCRF 676
+ K A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQI +F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKF 348
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 59.3 bits (137), Expect = 5e-10
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +2
Query: 362 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKR 541
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L+A + K
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 542 WAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQI 655
AY++P + + Q I G AL+L PTRELAQQ+
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQV 104
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 59.3 bits (137), Expect = 5e-10
Identities = 33/91 (36%), Positives = 54/91 (59%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILP 559
PI F+E + +++G+K YKEPTPIQA WP ++G++++ + K A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 560 AIVHINNQPPIRRGDGPIALVLAPTRELAQQ 652
A+ ++N + P LV++PTRELA Q
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 56.0 bits (129), Expect = 5e-09
Identities = 31/99 (31%), Positives = 53/99 (53%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE+ + G+ G++ P+PIQ + PIA+SG+++LA K K A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQISASCCRFWTHI 688
++ + + L+L PTRELA Q S C H+
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHM 139
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 56.0 bits (129), Expect = 5e-09
Identities = 30/88 (34%), Positives = 46/88 (52%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F+ N +++ V G+K+ TP+QA P+ + K+L+ K AY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQI 655
+ + G G AL++APTRELA QI
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQI 88
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 54.4 bits (125), Expect = 1e-08
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F+E D + + + +G+K PTPIQ + P+ ++ ++++ + K A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 572 I-NNQPPIRRGDGPIALVLAPTRELAQQIS 658
+ NN P A+VLAPTRELA QIS
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQIS 131
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 53.2 bits (122), Expect = 3e-08
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRV 529
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A +
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 530 PAKRWAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQISASCC 670
K ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 671 RF 676
+F
Sbjct: 277 KF 278
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 50.0 bits (114), Expect = 3e-07
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 500 KNLLA*PKRVPAKRWAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQI 655
+++L K K A+++P I ++ P R G G I +++PTRELA QI
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQI 177
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTL 543
++ +G AKTGSGKTL
Sbjct: 127 RDVLGAAKTGSGKTL 141
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/87 (29%), Positives = 47/87 (54%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F+ N + +G+ +G++ PT IQ + P+A+ GK+++ K A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQ 652
+ +P ++ L+L PTRELA Q
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQ 345
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/87 (27%), Positives = 44/87 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F+ + + + G+K PTPIQ + P+ + G++++ + K A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQ 652
+ + AL+L+P RELA Q
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQ 154
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 43.2 bits (97), Expect = 4e-05
Identities = 32/110 (29%), Positives = 56/110 (50%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 506 LLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 655
++A + K + + + I+ +R AL+L+PTRELA QI
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQI 105
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 43.2 bits (97), Expect = 4e-05
Identities = 32/109 (29%), Positives = 50/109 (45%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 506 LLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 652
+L K K A+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 499 KEFIGVAKTGSGKTL 543
++ +G AKTGSGKTL
Sbjct: 77 RDILGAAKTGSGKTL 91
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.3 bits (95), Expect = 6e-05
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLLA*PKRVPAKRWAYIL 556
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++ + K A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 557 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 655
+ ++ P P A+ LAP+RELA+QI
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQI 200
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.5 bits (93), Expect = 1e-04
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 463
P P++ ++ +++ + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 464 IQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 643
IQ P S ++LLA K AY+ P + + P G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
Query: 644 AQQI 655
+QI
Sbjct: 128 CEQI 131
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/88 (31%), Positives = 39/88 (44%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F + ++ +K + EPT IQ + G+N + K K A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQI 655
+ P G AL+L PTRELA QI
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQI 91
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/91 (27%), Positives = 47/91 (51%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPA 562
I F++ N + +G+ G++ P+ IQ + + +++LA + K + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 563 IVHINNQPPIRRGDGPIALVLAPTRELAQQI 655
+ I+ +++ AL+LAPTRELAQQI
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQI 103
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 35.9 bits (79), Expect = 0.006
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPI--A 616
G+ +P PIQ+ P A G +++ K A+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 617 LVLAPTRELAQQI 655
LV+APTRELA QI
Sbjct: 196 LVVAPTRELAHQI 208
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 34.7 bits (76), Expect = 0.013
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMS--GKNLLA*PKRVPAKRWAYILPAIVHINNQPPI--RRGDG 607
M PT IQ+ P ++ K+ + K AY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 608 PIALVLAPTRELAQQI 655
A+++APTREL QQI
Sbjct: 217 IYAVIMAPTRELCQQI 232
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.3 bits (75), Expect = 0.017
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +2
Query: 359 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLLA*PKRVPA 535
S ++ P + E A+ + + G+++ TP+Q + + + +N + K
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 536 KRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 655
K A++L A + P +++L+PTRELA QI
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 32.3 bits (70), Expect = 0.068
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGD 604
+ + G++ P+ +Q P ++ G ++L K K ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 605 GPIA-LVLAPTRELAQQISASCCRF 676
G ++ LVL TRELA QI RF
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARF 142
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRV 529
V V VE PI Y GV +GY + P G P+ ++G KRV
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIING-------KRV 305
Query: 530 PAKRWAYILPAIVHINNQPPIRRGD 604
P + + + + P ++RGD
Sbjct: 306 PTVGKVCMDMLAIDVTDVPDVKRGD 330
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +2
Query: 221 SEHASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 382
++ A R+G +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 383 IQYFEEANFPDYVQQGVKT 439
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 248 IPIWATHVLTSRQFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 105
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 563 WLARCRPNVLPEPVLATPINSFQT*LSASLELEWASVLCNP 441
WL RC +V+P P++ T + F LELE+ + P
Sbjct: 449 WLLRCLLSVMPSPLMPTLLALFN-----RLELEFKHLRSKP 484
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 180 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 22
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 689 RCVSKICSNLLKFVVLTLW 633
RC S +C++ F++ TLW
Sbjct: 21 RCKSTVCTSWRNFIIPTLW 39
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 89 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 9
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -2
Query: 245 PIWATHVLTSRQFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPV--TR 72
P + V S F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 71 HDYFSDLVEDVYLNYGFFLTQG 6
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -2
Query: 233 THVLTSRQFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 87
T +S +FF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 86 IPVT 75
PV+
Sbjct: 198 APVS 201
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 443 PLSLHLVAHNQENL--LLQSIE 384
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,922
Number of Sequences: 5004
Number of extensions: 61587
Number of successful extensions: 215
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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