Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0109
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 159 2e-39
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 145 3e-35
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 145 3e-35
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 120 1e-27
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 116 1e-26
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 116 1e-26
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 102 3e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 102 3e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 102 3e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 97 1e-20
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 84 7e-17
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 78 6e-15
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 76 3e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 68 5e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 66 2e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 64 6e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 63 1e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 62 3e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 61 6e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 60 1e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 59 2e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 58 5e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 58 5e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 58 7e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 58 7e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 55 5e-08
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 55 5e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 54 9e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 54 1e-07
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 54 1e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 53 2e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 53 2e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 51 8e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 50 1e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 4e-06
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 48 6e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 48 8e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 44 7e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 43 2e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 43 2e-04
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 42 4e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 41 7e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 41 9e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 40 0.002
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.003
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 39 0.004
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 38 0.006
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 38 0.008
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 38 0.008
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 36 0.019
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 36 0.019
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.033
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 34 0.077
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 31 0.95
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 30 1.7
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 30 1.7
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 30 1.7
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 2.9
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 3.8
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 3.8
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 29 3.8
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 29 3.8
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 5.1
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.1
At2g25460.1 68415.m03049 expressed protein 28 5.1
At4g27510.1 68417.m03951 expressed protein ; expression support... 28 6.7
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 159 bits (386), Expect = 2e-39
Identities = 76/149 (51%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Frame = +2
Query: 233 SPR-LGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPP 589
PDYV + VK G+ EPTPIQ+QGWP+AM G++L+ + K +Y+LPAIVH+N QP
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166
Query: 590 IRRGDGPIALVLAPTRELAQQISASCCRF 676
+ GDGPI LVLAPTRELA QI +F
Sbjct: 167 LAHGDGPIVLVLAPTRELAVQIQQEASKF 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 145 bits (351), Expect = 3e-35
Identities = 65/147 (44%), Positives = 96/147 (65%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIR 595
+ + + +G+ EPTPIQAQGWP+A+ G++L+ + K AY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 596 RGDGPIALVLAPTRELAQQISASCCRF 676
+ DGPI L+LAPTRELA QI +F
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKF 261
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 145 bits (351), Expect = 3e-35
Identities = 65/147 (44%), Positives = 96/147 (65%)
Frame = +2
Query: 236 PRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIR 595
+ + + +G+ EPTPIQAQGWP+A+ G++L+ + K AY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 596 RGDGPIALVLAPTRELAQQISASCCRF 676
+ DGPI L+LAPTRELA QI +F
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKF 261
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 120 bits (288), Expect = 1e-27
Identities = 53/139 (38%), Positives = 83/139 (59%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIAL 619
Y++PT IQ Q PI +SG++++ K K A++LP IVHI +QP ++R +GPI +
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGV 305
Query: 620 VLAPTRELAQQISASCCRF 676
+ APTRELA QI +F
Sbjct: 306 ICAPTRELAHQIFLEAKKF 324
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 116 bits (280), Expect = 1e-26
Identities = 55/139 (39%), Positives = 80/139 (57%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIAL 619
+ Y++P PIQAQ PI MSG++ + K K ++LP + HI +QPP+ GDGPI L
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 473
Query: 620 VLAPTRELAQQISASCCRF 676
V+APTREL QQI + +F
Sbjct: 474 VMAPTRELVQQIYSDIRKF 492
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 116 bits (280), Expect = 1e-26
Identities = 54/139 (38%), Positives = 80/139 (57%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIAL 619
+ Y++P PIQ Q PI MSG++ + K K ++LP + HI +QPP+ GDGPI L
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGL 606
Query: 620 VLAPTRELAQQISASCCRF 676
V+APTREL QQI + +F
Sbjct: 607 VMAPTRELVQQIHSDIRKF 625
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 102 bits (244), Expect = 3e-22
Identities = 53/130 (40%), Positives = 71/130 (54%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 646
QAQ WPIAM G++++A K K Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 647 QQISASCCRF 676
QI +F
Sbjct: 244 TQIQEEAVKF 253
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 102 bits (244), Expect = 3e-22
Identities = 53/130 (40%), Positives = 71/130 (54%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 646
QAQ WPIAM G++++A K K Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 647 QQISASCCRF 676
QI +F
Sbjct: 244 TQIQEEAVKF 253
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 102 bits (244), Expect = 3e-22
Identities = 53/130 (40%), Positives = 71/130 (54%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 646
QAQ WPIAM G++++A K K Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 647 QQISASCCRF 676
QI +F
Sbjct: 244 TQIQEEAVKF 253
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 96.7 bits (230), Expect = 1e-20
Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 4/140 (2%)
Frame = +2
Query: 269 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIA 616
+ G+ PTPIQAQ WPIA+ ++++A K K Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 617 LVLAPTRELAQQISASCCRF 676
L+LAPTRELA QI RF
Sbjct: 511 LILAPTRELATQIQDEALRF 530
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 84.2 bits (199), Expect = 7e-17
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Frame = +2
Query: 245 GFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 424
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQP---PIR 595
+ +K G PTPIQ QG P+ +SG++++ K ++LP I+ + PI
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIA 169
Query: 596 RGDGPIALVLAPTRELAQQ 652
G+GPIALV+ P+RELA+Q
Sbjct: 170 AGEGPIALVICPSRELAKQ 188
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Frame = +2
Query: 332 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 512 A*PKRVPAKRWAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQISASCCRF 676
+ K A++LP + +I+ PP+ +GP A+V+APTRELAQQI +F
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF 412
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 461 PIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQP---PIRRGDGPIALVLAP 631
PIQ QG P+ ++G++++ K ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 632 TRELAQQ 652
+RELA+Q
Sbjct: 231 SRELARQ 237
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGP 610
V + G+ P+PIQAQ WPIAM ++++A K K Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 611 IALVLAPTRELAQQISASCCRF 676
LVL+PTRELA QI +F
Sbjct: 303 TILVLSPTRELATQIQVEALKF 324
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 415
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 66.5 bits (155), Expect = 2e-11
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 494 SGKNLLA*PKRVPAKRWAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIS 658
G++L+ K K A+ +PAI+H+ I G P LVL+PTRELA QIS
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 64.5 bits (150), Expect = 6e-11
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Frame = +2
Query: 257 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDG-- 607
+ Y +PTP+Q PI + G++L+A + K A+ P I I ++R G
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234
Query: 608 ---PIALVLAPTRELAQQISASCCRF 676
P+A++L+PTRELA QI +F
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKF 260
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 63.3 bits (147), Expect = 1e-10
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Frame = +2
Query: 311 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 484
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 485 IAMSGKNLLA*PKRVPAKRWAYILPAI---VHINNQPPIRRGDGPIALVLAPTRELAQQI 655
A++GK+LLA K ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 62.1 bits (144), Expect = 3e-10
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Frame = +2
Query: 335 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 503 NLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 652
A K +A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 61.3 bits (142), Expect = 6e-10
Identities = 39/101 (38%), Positives = 55/101 (54%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVP 532
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 533 AKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 655
K A+ LP + + +P +R L+L PTRELA QI
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQI 254
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 60.1 bits (139), Expect = 1e-09
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Frame = +2
Query: 263 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDG---- 607
Y +PTP+Q PI +G++L+A + K A+ P I I I R G
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGV 223
Query: 608 -PIALVLAPTRELAQQISASCCRF 676
P+A++L+PTRELA QI +F
Sbjct: 224 YPLAVILSPTRELACQIHDEARKF 247
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHI-NNQPPIRRGDGPIA 616
MG++ PT +QAQ P+ +SG+++L K AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 617 LVLAPTRELAQQI 655
LV+ PTREL Q+
Sbjct: 108 LVIVPTRELCLQV 120
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 58.0 bits (134), Expect = 5e-09
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +2
Query: 320 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 500 KNLLA*PKRVPAKRWAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 655
K+++A K K AY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 58.0 bits (134), Expect = 5e-09
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE N V +K GYK PTPIQ + P+ +SG +++A + K A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQ 652
+ P +G G AL+L+PTR+LA+Q
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQ 113
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 7e-09
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRV 529
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 530 PAKRWAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQISASCCRF 676
K A+ P I I + R G P A++L+PTRELA QI +F
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 57.6 bits (133), Expect = 7e-09
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRV 529
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A +
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 530 PAKRWAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQISASCCRF 676
K A+ P I I + R G P A++L+PTRELA QI +F
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKF 252
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 54.8 bits (126), Expect = 5e-08
Identities = 30/99 (30%), Positives = 52/99 (52%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQISASCCRFWTHI 688
I+ + + A+++ PTRELA Q S C H+
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHL 226
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 54.8 bits (126), Expect = 5e-08
Identities = 30/99 (30%), Positives = 52/99 (52%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE+ + G+ G++ P+PIQ + PIA++G+++LA K K A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQISASCCRFWTHI 688
I+ + + A+++ PTRELA Q S C H+
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHL 226
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/92 (32%), Positives = 52/92 (56%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQISASC 667
I+ + + + A++L PTRELA Q S C
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVC 242
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/92 (32%), Positives = 51/92 (55%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQISASC 667
I+ + + A++L PTRELA Q S C
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVC 212
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/92 (32%), Positives = 51/92 (55%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE+ + +G+ G+++P+PIQ + PIA++G ++LA K K A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQISASC 667
I+ + + A++L PTRELA Q S C
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVC 212
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGD 604
+ +K G++ T +Q PI + GK++LA K K A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 605 GP---IALVLAPTRELAQQISA 661
I LV+ PTRELA Q +A
Sbjct: 455 RQPPIIVLVVCPTRELASQAAA 476
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F++ +G++ G+K T +Q P+ + GK++LA K K A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 572 INNQPPIRRGDGP---IALVLAPTRELAQQISA 661
+ PP R + I LV+ PTRELA Q +A
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAA 174
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 50.8 bits (116), Expect = 8e-07
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGD 604
+ +K GY+ T +Q PI + GK++LA K K A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 605 --GPI-ALVLAPTRELAQQ 652
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 50.0 bits (114), Expect = 1e-06
Identities = 36/131 (27%), Positives = 59/131 (45%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIAL 619
MG+ T IQA+ P M G+++L + K A+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 620 VLAPTRELAQQ 652
V+ PTRELA Q
Sbjct: 231 VICPTRELAIQ 241
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.4 bits (110), Expect = 4e-06
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = +2
Query: 356 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPA 535
V VEV NP + +++ +K G + PIQA + + + G +L+ +
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 536 KRWAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQISA 661
K A++LP + + N P + G P LVL PTRELA+Q++A
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAA 192
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 48.0 bits (109), Expect = 6e-06
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWA 547
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++ + K A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 548 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIS 658
+ +P + + +++P R P A VL+PTRELA QI+
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA 106
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/89 (32%), Positives = 48/89 (53%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FE ++ + K +G ++PTP+Q P ++G+++L + K A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 572 INNQPPIRRGDGPIALVLAPTRELAQQIS 658
+ P G ALV+ PTRELA Q++
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLA 143
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/90 (25%), Positives = 48/90 (53%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPA 562
++ F + D ++G+K Y + T +Q+ P A+ G+++L + K A+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 563 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 652
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRERWSPE-DGVGCIIISPTRELAAQ 158
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F E + + + +K + P IQA + + GK+ + + K AY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 572 INN---QPPIRRGDG-PIALVLAPTRELAQQISASC 667
+ Q + G P +VL PT ELA Q+ A+C
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQVLANC 471
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPA 562
++ F+E + V ++ + + PT IQ G P M K+++ K AY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 563 IVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 655
IV + + G P +VL PTREL++Q+
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQV 205
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHI-NNQPPIR 595
+ + + + G ++ PIQ AM G++++ + K A+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 596 RGDGPIALVLAPTRELAQQI 655
RG P+ LVLAPTRELA+Q+
Sbjct: 175 RGRNPLCLVLAPTRELARQV 194
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.1 bits (92), Expect = 7e-04
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +2
Query: 323 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 503 NLLA*PKRVPAKRWAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQ 652
++L + K A+++PA+ + + R G G +V+ PTRELA Q
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQ 176
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 40.7 bits (91), Expect = 9e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +2
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINN-QPPIR 595
+ + +K G ++ PIQ AM G++++ + K A+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 596 RGDGPIALVLAPTRELAQQI 655
RG P LVLAPTRELA+Q+
Sbjct: 187 RGKNPQCLVLAPTRELARQV 206
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = +2
Query: 338 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG--KNL 508
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 509 LA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 652
+A K ++L + ++ P +R P AL + PTRELA Q
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQ 177
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
F+E+ + + G + T +Q + GK+ L K K A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 572 I----NNQPPIRRGDGPIALVLAPTRELAQQISA 661
+ N+ + + AL+L PTRELA QI+A
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAA 423
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +2
Query: 473 QGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 643
Q P A++GK+LLA K ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 644 AQQI 655
Q+
Sbjct: 62 CVQV 65
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 404 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQ 583
+ P +++ ++ G PIQ A+ G++++A K K A+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 584 P----PIRR-GDGPIALVLAPTRELAQQI 655
RR G P LVLAPTRELA+Q+
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.1 bits (87), Expect = 0.003
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Frame = +2
Query: 269 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 430
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGP 610
+ G + T +Q + GK+ L K K A++LPAI + +G
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 611 IA----LVLAPTRELAQQISA 661
+A L+L PTRELA QI+A
Sbjct: 450 VAPIFVLILCPTRELASQIAA 470
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 38.7 bits (86), Expect = 0.004
Identities = 29/91 (31%), Positives = 48/91 (52%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILP 559
PI+ F++ D V +GV GYK+P+ IQ + + G++++A + K + I
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT-SMIAI 78
Query: 560 AIVHINNQPPIRRGDGPIALVLAPTRELAQQ 652
++ I N R+ LVL+P+RELA Q
Sbjct: 79 SVCQIVNISS-RKVQ---VLVLSPSRELASQ 105
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVH 571
FEE PD + ++ G+ PT +Q+ P + G + + K AY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 572 INNQPPIRRGDGP--------IALVLAPTRELAQQI 655
I R A+++AP+REL QI
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHI---NNQPPIRRGDGPI 613
G++ TP+QA+ P S K+++ K A++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 614 ALVLAPTRELAQQI 655
++++PTREL+ QI
Sbjct: 93 GVIISPTRELSAQI 106
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHI---NNQPPIRRGDGPI 613
G++ TP+QA+ P S K+++ K A++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 614 ALVLAPTRELAQQI 655
++++PTREL+ QI
Sbjct: 94 GVIISPTRELSAQI 107
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPI-AL 619
G++ P+ +Q + P A+ G +++ K K ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 620 VLAPTRELAQQISASCCRFWTHI 688
VL TRELA QI RF T++
Sbjct: 119 VLCHTRELAYQICNEFVRFSTYL 141
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPPIRRGDGPI-AL 619
G++ P+ +Q + P A+ G +++ K K ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 620 VLAPTRELAQQISASCCRFWTHI 688
VL TRELA QI RF T++
Sbjct: 119 VLCHTRELAYQICNEFVRFSTYL 141
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/83 (25%), Positives = 41/83 (49%)
Frame = +2
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQPP 589
P+++ ++ +G+ PT IQ + P +G++ + + K Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 590 IRRGDGPIALVLAPTRELAQQIS 658
+ A+++ PTREL Q++
Sbjct: 144 SVQ-----AVIVVPTRELGMQVT 161
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 34.3 bits (75), Expect = 0.077
Identities = 27/100 (27%), Positives = 47/100 (47%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVP 532
T G+E PI F + + V +GV G+++P+ IQ + + G++++A +
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 533 AKRWAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 652
K L ++ + AL+L+PTRELA Q
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQ 118
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 30.7 bits (66), Expect = 0.95
Identities = 26/96 (27%), Positives = 46/96 (47%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA*PKRVPAKRWA 547
EVH + F+ + + +G+ G+++P+ IQ +G G +++ + K
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 548 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 655
+ + ++ + ALVLAPTRELAQQI
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQI 123
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 458 TPIQAQGWPIAMSGKNLLA*PKRVPAKRWAYILPAIVHINNQ---PPIRRGDGPIALVLA 628
TP+QA P+ S K++ K A+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 629 PTRELAQQI 655
PTREL+ QI
Sbjct: 98 PTRELSTQI 106
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 614 ALVLAPTRELAQQI 655
ALVLAPTRELAQQI
Sbjct: 110 ALVLAPTRELAQQI 123
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 614 ALVLAPTRELAQQI 655
ALVLAPTRELAQQI
Sbjct: 112 ALVLAPTRELAQQI 125
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 487 SYVWKEFIGVAKTGSGKTLGLHL 555
+Y K+ IG A+TGSGKTL L
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGL 247
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 230 ASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 409
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 410 PDYVQQGVKTM 442
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 216
Query: 452 EPTPIQAQGWPIAMSGKNLLA*PKRVPAKRW 544
T + Q W +LL + +PA RW
Sbjct: 217 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 244
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 451
K D H +L P+E + + H+V + VE ++ E+ F + VQ+ K +G
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 292
Query: 452 EPTPIQAQGWPIAMSGKNLLA*PKRVPAKRW 544
T + Q W +LL + +PA RW
Sbjct: 293 -ATLVICQ-WGFDDEANHLLM-HRNLPAVRW 320
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 203 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 24
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 654 ICCANSLVGAKTKAIGPSPLRI 589
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 150 EKNYRRICCLLQIWNHRFHGYY 85
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At4g27510.1 68417.m03951 expressed protein ; expression supported
by MPSS
Length = 677
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 489 LCLERIYWRSQNGFR 533
+C+ER+YW+ N FR
Sbjct: 250 MCVERLYWKKGNAFR 264
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,300
Number of Sequences: 28952
Number of extensions: 319760
Number of successful extensions: 1126
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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