Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0107
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 177 5e-45
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 177 5e-45
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 176 9e-45
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 176 9e-45
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 176 9e-45
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 174 4e-44
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 159 1e-39
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 69 3e-12
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 68 5e-12
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 68 6e-12
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 67 8e-12
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 67 1e-11
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 67 1e-11
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 67 1e-11
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 66 1e-11
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 66 1e-11
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 36 0.018
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 36 0.023
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 33 0.22
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.22
At3g26855.1 68416.m03360 hypothetical protein 28 6.2
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS... 28 6.2
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 27 8.2
At3g11690.1 68416.m01433 expressed protein 27 8.2
At1g68080.1 68414.m07777 expressed protein 27 8.2
At1g62870.1 68414.m07099 expressed protein 27 8.2
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 27 8.2
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 177 bits (431), Expect = 5e-45
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = +3
Query: 255 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 434
DWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAF
Sbjct: 345 DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAF 404
Query: 435 VHWYVGEGMEEGEFSEAREDLAALER 512
VHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEK 430
Score = 157 bits (381), Expect = 6e-39
Identities = 70/85 (82%), Positives = 76/85 (89%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
V YPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 260 VPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMY 319
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RGDVVPKDVNAA+ TIKTKRT+QFV
Sbjct: 320 RGDVVPKDVNAAVGTIKTKRTVQFV 344
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 177 bits (431), Expect = 5e-45
Identities = 77/86 (89%), Positives = 83/86 (96%)
Frame = +3
Query: 255 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 434
DWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAF
Sbjct: 345 DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAF 404
Query: 435 VHWYVGEGMEEGEFSEAREDLAALER 512
VHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEK 430
Score = 157 bits (381), Expect = 6e-39
Identities = 70/85 (82%), Positives = 76/85 (89%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
V YPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 260 VPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMY 319
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RGDVVPKDVNAA+ TIKTKRT+QFV
Sbjct: 320 RGDVVPKDVNAAVGTIKTKRTVQFV 344
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 176 bits (429), Expect = 9e-45
Identities = 76/86 (88%), Positives = 84/86 (97%)
Frame = +3
Query: 255 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 434
DWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAF
Sbjct: 345 DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
Query: 435 VHWYVGEGMEEGEFSEAREDLAALER 512
VHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEK 430
Score = 159 bits (387), Expect = 1e-39
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
V YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RGDVVPKDVNAA+ TIKTKRTIQFV
Sbjct: 320 RGDVVPKDVNAAVGTIKTKRTIQFV 344
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 176 bits (429), Expect = 9e-45
Identities = 76/86 (88%), Positives = 84/86 (97%)
Frame = +3
Query: 255 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 434
DWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAF
Sbjct: 345 DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
Query: 435 VHWYVGEGMEEGEFSEAREDLAALER 512
VHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEK 430
Score = 159 bits (387), Expect = 1e-39
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
V YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RGDVVPKDVNAA+ TIKTKRTIQFV
Sbjct: 320 RGDVVPKDVNAAVGTIKTKRTIQFV 344
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 176 bits (429), Expect = 9e-45
Identities = 76/86 (88%), Positives = 84/86 (97%)
Frame = +3
Query: 255 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 434
DWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAF
Sbjct: 345 DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
Query: 435 VHWYVGEGMEEGEFSEAREDLAALER 512
VHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEK 430
Score = 159 bits (387), Expect = 1e-39
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
V YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RGDVVPKDVNAA+ TIKTKRTIQFV
Sbjct: 320 RGDVVPKDVNAAVGTIKTKRTIQFV 344
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 174 bits (424), Expect = 4e-44
Identities = 75/86 (87%), Positives = 83/86 (96%)
Frame = +3
Query: 255 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 434
DWCPTGFK GINYQPP+VVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAF
Sbjct: 345 DWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAF 404
Query: 435 VHWYVGEGMEEGEFSEAREDLAALER 512
VHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEK 430
Score = 148 bits (358), Expect = 4e-36
Identities = 65/85 (76%), Positives = 72/85 (84%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
V YPRIHF L +YAPVIS+ KAYHEQ SV EIT + FEP+N M KCDPRHGKYMACC++Y
Sbjct: 260 VPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMY 319
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RGDVVPKDVN A+A IK KRTIQFV
Sbjct: 320 RGDVVPKDVNTAVAAIKAKRTIQFV 344
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 159 bits (387), Expect = 1e-39
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
V YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RGDVVPKDVNAA+ TIKTKRTIQFV
Sbjct: 320 RGDVVPKDVNAAVGTIKTKRTIQFV 344
Score = 90.2 bits (214), Expect = 1e-18
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +3
Query: 255 DWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 380
DWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE
Sbjct: 345 DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/102 (32%), Positives = 55/102 (53%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++
Sbjct: 259 IPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIF 318
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFVTGVQPVSRSVSTTSHPP 306
RG + K+V+ I I+ K + FV + P + S PP
Sbjct: 319 RGQMSTKEVDEQILNIQNKNSSYFVEWI-PNNVKSSVCDIPP 359
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + PP ++ A + N+T+I E + R+ +
Sbjct: 336 NKNSSYFV--EWIPNNVKSSVCDIPPK--------GLKMAATFVGNSTSIQEMFRRVSEQ 385
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 386 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 68.1 bits (159), Expect = 5e-12
Identities = 32/102 (31%), Positives = 55/102 (53%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++
Sbjct: 259 IPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMF 318
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFVTGVQPVSRSVSTTSHPP 306
RG + K+V+ I ++ K + FV + P + S PP
Sbjct: 319 RGKMSTKEVDEQILNVQNKNSSYFVEWI-PNNVKSSVCDIPP 359
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/91 (32%), Positives = 52/91 (57%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 336 NKNSSYFV--EWIPNNVKSSVCDIPPT--------GIKMASTFVGNSTSIQEMFRRVSEQ 385
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 386 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + LSV E+T ++ N M DPRHG+Y+ ++
Sbjct: 258 IPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVF 317
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RG + K+V+ + I+ K + FV
Sbjct: 318 RGKLSTKEVDEQMMNIQNKNSSYFV 342
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/91 (31%), Positives = 52/91 (57%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + + P G ++ A + N+T+I E + R+ +
Sbjct: 335 NKNSSYFV--EWIPNNVKSSVC----DIAPKG----LKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 67.3 bits (157), Expect = 8e-12
Identities = 28/85 (32%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + LSV E+T ++ N M DPRHG+Y+ ++
Sbjct: 258 IPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVF 317
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RG + K+V+ + ++ K + FV
Sbjct: 318 RGKMSTKEVDEQMMNVQNKNSSYFV 342
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/91 (31%), Positives = 52/91 (57%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + + P G ++ A + N+T+I E + R+ +
Sbjct: 335 NKNSSYFV--EWIPNNVKSSVC----DIAPTG----LKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++
Sbjct: 258 IPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMF 317
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RG + K+V+ + ++ K + FV
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFV 342
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/91 (32%), Positives = 52/91 (57%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 335 NKNSSYFV--EWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++
Sbjct: 258 IPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMF 317
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RG + K+V+ + ++ K + FV
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFV 342
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/91 (32%), Positives = 52/91 (57%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 335 NKNSSYFV--EWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++
Sbjct: 258 IPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMF 317
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RG + K+V+ + ++ K + FV
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFV 342
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/91 (32%), Positives = 52/91 (57%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 335 NKNSSYFV--EWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 66.5 bits (155), Expect = 1e-11
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++
Sbjct: 258 IPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMF 317
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RG + K+V+ + ++ K + FV
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFV 342
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/91 (32%), Positives = 52/91 (57%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + PPT ++ A + N+T+I E + R+ +
Sbjct: 335 NKNSSYFV--EWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQ 384
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 66.5 bits (155), Expect = 1e-11
Identities = 27/85 (31%), Positives = 49/85 (57%)
Frame = +1
Query: 1 VRYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 180
+ +PR+HF +V +AP+ S + L+V E+T ++ N M DPRHG+Y+ ++
Sbjct: 258 IPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMF 317
Query: 181 RGDVVPKDVNAAIATIKTKRTIQFV 255
RG + K+V+ + ++ K + FV
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFV 342
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/91 (31%), Positives = 51/91 (56%)
Frame = +3
Query: 225 HQNQAYYPIRDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 404
++N +Y+ +W P K + + P G + A + N+T+I E + R+ +
Sbjct: 335 NKNSSYFV--EWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQEMFRRVSEQ 384
Query: 405 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 497
F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 385 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 36.3 bits (80), Expect = 0.018
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Frame = +1
Query: 10 PRIHFPLVTYAPVISAEKA-YHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACC 171
PR HF + Y P+ +A + +V ++ + N MV R+ KY++
Sbjct: 264 PRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISIL 323
Query: 172 MLYRGDVVPKDVNAAIATIKTKRTIQFVTGVQPVSRSVSTTSHPPWCPEA 321
+ +G+V P V+ ++ I+ ++ + F+ P S V+ + P+ A
Sbjct: 324 NIIQGEVDPTQVHESLQRIRERKLVNFIEW-GPASIQVALSKKSPYVQTA 372
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Frame = +1
Query: 10 PRIHFPLVTYAPVISAEKA-YHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACC 171
PR HF + Y P+ +A + +V ++ + N MV R+ KY++
Sbjct: 264 PRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISIL 323
Query: 172 MLYRGDVVPKDVNAAIATIKTKRTIQFVTGVQPVSRSVSTTSHPPW 309
+ +G+V P V+ ++ I+ ++ + F+ P S V+ + P+
Sbjct: 324 NIIQGEVDPTQVHESLQRIRERKLVNFIDW-GPASIQVALSKKSPY 368
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 391 ALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 498
A ++S + +P+V+S S R WR SS P+R W
Sbjct: 31 AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 216 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 109
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At3g26855.1 68416.m03360 hypothetical protein
Length = 163
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 412 SCTPSVLSCTGTSVRVWRRESSPK 483
SC P +LS + VR W +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137
>At1g31630.1 68414.m03884 MADS-box family protein similar to
MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
Length = 339
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 228 QNQAYYPIRDWCPTGFKVGINYQPP 302
QNQ Y PI+ + PT F I YQ P
Sbjct: 225 QNQ-YEPIQPYIPTAFSDNIQYQAP 248
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1610
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 296 LVVDTDLETGWTPVTNWIVRLVLMV 222
L +TD+ G+T VTNW L+L +
Sbjct: 866 LTEETDVFDGYTEVTNWESELILYI 890
>At3g11690.1 68416.m01433 expressed protein
Length = 252
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 8 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 187
TP S+ S RQ L R +++S PSPR+ S+P T A+ W C +V
Sbjct: 21 TPSSSPSRSNRRQPLLQR--SLSS-PSPRASCGGSTPAEFCGGTTASCAAVWCCCPCGLV 77
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 246 DSTLGFDGSDGRVHILGYDVTTVQ 175
+ +GFD R+H+LG+DV ++Q
Sbjct: 214 NQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +2
Query: 2 CVTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 121
C S S+ SRT L R P NS P P S S PP
Sbjct: 84 CDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 507 RGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 403
R +PG +G+ R+ PP P R S + H +T +T
Sbjct: 12 RLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,252,705
Number of Sequences: 28952
Number of extensions: 324786
Number of successful extensions: 1104
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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