Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0106
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 30 0.21
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 29 0.28
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.28
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 29 0.36
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 1.1
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 1.1
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 1.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 1.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 2.6
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 2.6
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 26 3.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 3.4
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 25 4.5
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 25 4.5
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 4.5
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 4.5
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 25 5.9
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 25 5.9
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 7.8
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 7.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 7.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.8
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 29.9 bits (64), Expect = 0.21
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 474 SIVFSIVIFGHFFSIRSFYKFSFRF 400
S + +V+F HF S++ Y FSF F
Sbjct: 3721 SFLSVVVVFQHFISLKKSYSFSFNF 3745
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 29.5 bits (63), Expect = 0.28
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEM 444
+DK K+S + K D+ +++K RD++ SK L K S +++
Sbjct: 154 KDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKKV 200
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 29.5 bits (63), Expect = 0.28
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMA 447
+++K+ +S +D + DTS EK+ L D A+ +R+ I+ D E +A
Sbjct: 55 NKEKKEGQS-EDMFSDTSEDEKRTLPND---EAQKRRDFIENGDAERLA 99
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 29.1 bits (62), Expect = 0.36
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 343 KDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
K T +K+K+H + +DK + SK+ +SD+EE K
Sbjct: 194 KITKKKKKEH--KKKDKESSSKKRKSGSSDKEEKKK 227
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 164 EDDQSEDGELARSPIHDEMDFSLSDEDRDNQMR 262
E+D SE G + ++ + D +++DE+ D Q R
Sbjct: 33 EEDGSESGNIQKTLLEDPCPENVNDENEDEQNR 65
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 451 LWPFLLDQKFL*VLF*ILQTYHGP 380
LWP L Q+F+ V+F I TY+ P
Sbjct: 436 LWPLLHPQRFVDVVFAIDSTYNDP 459
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 451 LWPFLLDQKFL*VLF*ILQTYHGP 380
LWP L Q+F+ V+F I TY+ P
Sbjct: 436 LWPLLHPQRFVDVVFAIDSTYNDP 459
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE---EMAKDYYRE 465
DKR+KRS D+ D H+ K+A K D E +MAKD +E
Sbjct: 822 DKRNKRSKNDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQE 877
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDK 393
+DK H + KDK K+K+H +DK
Sbjct: 369 KDKEHHKGPKDKEHHKGPKDKEHHKGPKDK 398
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDK 393
+DK H + KDK K+K+H +DK
Sbjct: 378 KDKEHHKGPKDKEHHKGPKDKEHHKGPKDK 407
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDK 393
+DK H + KDK K+K+H +DK
Sbjct: 387 KDKEHHKGPKDKEHHKGPKDKEHHKGPKDK 416
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDK 393
DK H + KDK K+K+H +DK
Sbjct: 361 DKEHHKGPKDKEHHKGPKDKEHHKGPKDK 389
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTS 429
+DK H + KDK K+K+H ++K + + +++S
Sbjct: 396 KDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSS 437
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 405 RFCRLITVPEEMLLFFSRCVFVFIFCRSLVALVPVCGSDH 286
R CR++ L FS + F+FC ++L+P+ SD+
Sbjct: 666 RSCRVLLFISTAL--FSIIMIYFVFCVFYISLIPLHNSDN 703
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 310 KRHKRSAKDKYKDTSRKEKKHLFRD 384
+ HK +D+Y+ T R+E+ + RD
Sbjct: 232 RSHKERYEDRYRPTRRRERHYRTRD 256
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
RT +K + AK ++T K++ +RD K++RE + + +EE ++ R+
Sbjct: 670 RTIKNNKDMQTKAKRAMRETMVFWKRNERVERDLRKKAEREALDRAKKEEELRESRRQ 727
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 182 DGELARSPIHDEMDFSLSDEDRDNQMR*LSSLLKQ*SEPHTGTSATRDLQKINTKTHLEK 361
DG+ + S HD+ D E+ N +L + EP L + +T+T L++
Sbjct: 430 DGKHSHSLHHDKFDACTKGENTANNGYGPQTLNETSEEPSLDDILDTSLLQPSTQTDLQE 489
Query: 362 KRSIS 376
+ S+S
Sbjct: 490 ENSVS 494
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/51 (19%), Positives = 24/51 (47%)
Frame = +1
Query: 262 LIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRE 414
++ KPP+ ++ +RH R + ++E K + ++K + +E
Sbjct: 15 IVEKPPKQLVEVKRSVQRHARGFPAVSRTLPKRESKSMSAYKEKMLRKNKE 65
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 155 SNYEDDQSEDGELARSPIHDEMDFSLSDEDRDNQMR*LS 271
S+ DD+ EL + DE+D+ +D+D +N ++ LS
Sbjct: 596 SSSSDDEQRISELNDREL-DEIDWQAADQDVENALKDLS 633
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKREL 417
HR+KR R K + K+ S K+K + +K + +L
Sbjct: 552 HREKRQLRKEKPEKKNNSTKQKDLITVSHNKGTTAIEDL 590
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKK 369
RD RHKRSA + RK++K
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRK 26
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKK 369
RD RHKRSA + RK++K
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRK 26
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
D+ R A+ ++ K+ +DK + +KR+ K ++EE+ + Y + N
Sbjct: 685 DEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRK--KQMEKEEVPRAYKKTKN 737
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 7.8
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +1
Query: 277 PQAVIRTTHRDKRHKRSAKDKYK-DTSRKEKKHLFRDR------DKSAKSKRELIKTSDR 435
P I+ + + K KY D+ RK K+ RDR D+S + +SD+
Sbjct: 138 PLLAIKQQEQKQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDK 197
Query: 436 EEMAKDYYREN 468
E ++ YR +
Sbjct: 198 REHSRRSYRND 208
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 290 SEPHTGTSATRDLQKINTKTHLEKKR 367
++ HTGTS T L+ +K H E K+
Sbjct: 59 NQGHTGTSDTSSLEMELSKLHPESKQ 84
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 7.8
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 256 DALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHL--FRDRDKSAKSKRELIKTS 429
D LI + I +R+KR D +DT+ K+K L ++ + A KT
Sbjct: 1255 DKLIRGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEGDAKTG 1314
Query: 430 DREEM 444
D EM
Sbjct: 1315 DDNEM 1319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,891
Number of Sequences: 5004
Number of extensions: 27090
Number of successful extensions: 143
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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