Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0106
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12230.1 68418.m01435 expressed protein 37 0.008
At5g57370.1 68418.m07168 expressed protein low similarity to nuc... 34 0.057
At5g19480.1 68418.m02321 expressed protein 34 0.057
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 33 0.075
At3g29075.1 68416.m03637 glycine-rich protein 33 0.075
At3g23930.1 68416.m03006 expressed protein 33 0.075
At5g53800.1 68418.m06685 expressed protein 33 0.100
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 32 0.17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 32 0.17
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta... 31 0.30
At1g07840.2 68414.m00851 leucine zipper factor-related similar t... 31 0.30
At1g07840.1 68414.m00850 leucine zipper factor-related similar t... 31 0.30
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 31 0.40
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 31 0.40
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 31 0.40
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.40
At5g53440.1 68418.m06641 expressed protein 31 0.53
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 31 0.53
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.53
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 30 0.70
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 30 0.70
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 30 0.93
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 30 0.93
At2g41960.1 68415.m05191 expressed protein 30 0.93
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 1.2
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 1.2
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 29 1.2
At3g53640.1 68416.m05925 protein kinase family protein contains ... 29 1.6
At3g28770.1 68416.m03591 expressed protein 29 1.6
At1g69070.1 68414.m07903 expressed protein 29 1.6
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 2.1
At5g27860.1 68418.m03342 expressed protein 29 2.1
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 2.1
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p... 28 2.8
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p... 28 2.8
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 28 2.8
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 28 3.7
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 27 5.0
At4g01560.1 68417.m00202 brix domain-containing protein contains... 27 5.0
At3g58050.1 68416.m06471 expressed protein 27 5.0
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 27 5.0
At3g13980.1 68416.m01765 expressed protein 27 5.0
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 27 5.0
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 27 6.5
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 27 6.5
At5g44310.2 68418.m05424 late embryogenesis abundant domain-cont... 27 6.5
At5g44310.1 68418.m05423 late embryogenesis abundant domain-cont... 27 6.5
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ... 27 6.5
At4g35940.1 68417.m05113 expressed protein 27 6.5
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 27 6.5
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 27 6.5
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 27 6.5
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 27 6.5
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 27 6.5
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai... 27 8.7
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 8.7
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 8.7
At3g51640.1 68416.m05663 expressed protein 27 8.7
At2g27285.1 68415.m03279 expressed protein weak similarity to ma... 27 8.7
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 8.7
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 27 8.7
At1g13350.1 68414.m01550 protein kinase family protein contains ... 27 8.7
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 36.7 bits (81), Expect = 0.008
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +1
Query: 274 PPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
P ++ + RD++HK+ KD+ KD R+ KKH + +D+S ++ K DR++
Sbjct: 115 PSKSKSESKDRDRKHKKH-KDRDKDKDREHKKHKHKHKDRSKDKDKD--KDRDRKK 167
Score = 36.3 bits (80), Expect = 0.011
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 328 AKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDR---EEMAKDYYRENNTTG 480
+K + KD RK KKH RD+DK + K+ K DR ++ KD R+ + G
Sbjct: 118 SKSESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNG 171
Score = 31.1 bits (67), Expect = 0.40
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
+ K+HK KDK ++ + + KH R +DK R+ K + + D+ ++++
Sbjct: 128 KHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSGDHSKKHH 183
>At5g57370.1 68418.m07168 expressed protein low similarity to
nucleic acid binding protein [Homo sapiens] GI:431953
Length = 219
Score = 33.9 bits (74), Expect = 0.057
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
R RD+R R +D+ +D R+ + RDRD+ ++K+ +T D A+
Sbjct: 15 REPDRDRRRGRDDRDRDRDRDRERDRE--RDRDRGLRNKKSRSRTPDHHARAR 65
>At5g19480.1 68418.m02321 expressed protein
Length = 207
Score = 33.9 bits (74), Expect = 0.057
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENNTT 477
+D++H++ K KD K+ KH +DR K ++ K ++ D R+NN T
Sbjct: 126 KDRKHRKHKDKKEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKSG-HHDKKRKNNGT 182
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENNT 474
+D+ HK+ K K+KD + + K RD+ K + + ++ E A D R +
Sbjct: 139 KDREHKKH-KHKHKDRIKDKDKDKDRDKKKEKSGHHDKKRKNNGTEDADDVQRHKKS 194
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 33.5 bits (73), Expect = 0.075
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENNTT 477
++K+ K +KDK K+ K+ KH + + K K + ++ E + +REN T
Sbjct: 30 KEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEKGKPLEEKKAELLTNAGHRENRVT 87
Score = 29.9 bits (64), Expect = 0.93
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
+++K+HK KDK K KEKK R +DK + K + K D+++ K
Sbjct: 15 YKEKKHK---KDKEKREG-KEKKSKDRSKDKQKERKEKKDKHKDQKDKEK 60
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 319 KRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKD 453
K AKDK ++ +KE+K +K+ + K +LI+ EE KD
Sbjct: 226 KTEAKDKDRNKEKKEEK--TESINKTRQEKPKLIRGPKLEEREKD 268
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 33.5 bits (73), Expect = 0.075
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
D K+ K Y D K+KK + D D K K D ++ K+Y+ + +
Sbjct: 201 DYDEKKKKKKDYNDDDEKKKKKHYNDDDDEKKKKHNYNDDDDEKKKKKEYHDDED 255
Score = 31.5 bits (68), Expect = 0.30
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
+ D K+ K D K+KKH + D D K K+E D+++
Sbjct: 212 YNDDDEKKKKKHYNDDDDEKKKKHNYNDDDDEKKKKKEYHDDEDKKK 258
>At3g23930.1 68416.m03006 expressed protein
Length = 224
Score = 33.5 bits (73), Expect = 0.075
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 295 TTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE 438
T+ +++R RS K+ KD SR ++HL ++RD+ K +K ++RE
Sbjct: 5 TSKQERRGVRSVKETSKDQSRG-RRHLIKERDEREKVMFLQLKEAERE 51
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 33.1 bits (72), Expect = 0.100
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
D+R +R K K ++ KE+K R++DK ++K + R+E K
Sbjct: 128 DERRRRKRKRKEREEEEKERKRRRREKDKKKRNKSDKDGDKKRKEKKK 175
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 298 THRDKRHKRSA-KDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
T+RDK R +D+ +D R+ + RDRD+ R+ + DRE ++ RE
Sbjct: 70 TNRDKDRDRDRDRDRERDRDRERDRGRDRDRDRDRDRDRDRERERDRERDRRERDRE 126
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
R RD+ R +D+ D +EK+ R+ + A+ K + K +RE+
Sbjct: 110 RERERDRERDRRERDREPDRRNREKE---REEEVKAREKARVEKLVEREK 156
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENNTTG 480
HR+ R KD+ +D R+E+K R+R+K + +RE + +E K+ R G
Sbjct: 123 HREHERDRG-KDRKRDREREERKDKEREREKD-RERREREREEREKERVKERERREREDG 180
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKD 453
RDKR + +++ R K RDR++ + +E + DRE ++
Sbjct: 111 RDKRRVNEKERGHREHERDRGKDRKRDREREERKDKEREREKDRERRERE 160
>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 598
Score = 31.5 bits (68), Expect = 0.30
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
R+KR KR + K K RKE+K RD K K+K+ ++ D + +
Sbjct: 55 REKRRKREKERKRKKIERKERKR--RDMKKKKKTKKREYESDTESYSGSDSFSD 106
>At1g07840.2 68414.m00851 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 31.5 bits (68), Expect = 0.30
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 343 KDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYY 459
+D +RKEK H FR ++ K L DR E +DYY
Sbjct: 188 RDAARKEK-HFFRQATENTYMKDVLDDLEDRPEEIRDYY 225
>At1g07840.1 68414.m00850 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 31.5 bits (68), Expect = 0.30
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 343 KDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYY 459
+D +RKEK H FR ++ K L DR E +DYY
Sbjct: 188 RDAARKEK-HFFRQATENTYMKDVLDDLEDRPEEIRDYY 225
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTS-DRE-EMAKDYYRENN 471
D + KR ++D ++TSR + + + RDK + E+ + S DR+ E +K+ R+ +
Sbjct: 34 DSKPKRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKD 90
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTS-DRE-EMAKDYYRENN 471
D + KR ++D ++TSR + + + RDK + E+ + S DR+ E +K+ R+ +
Sbjct: 34 DSKPKRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKD 90
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTS-DRE-EMAKDYYRENN 471
D + KR ++D ++TSR + + + RDK + E+ + S DR+ E +K+ R+ +
Sbjct: 34 DSKPKRESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKD 90
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 292 RTTHRDKRHKRS-AKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE 438
R + R + H RS ++D+ +D R ++H RDRD+ +E DRE
Sbjct: 59 RRSKRSRSHHRSRSRDRERDRHRSSREH--RDRDREKDVDKEERNGKDRE 106
Score = 30.7 bits (66), Expect = 0.53
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
R+ R +RH+ ++K + KE++ RDRD+ +R K D+ E D R+
Sbjct: 127 RSRSRSERHRSQEREKSLEIEPKERETKDRDRDR----RRHKDKKEDKVEPEADPERDQR 182
Query: 472 T 474
T
Sbjct: 183 T 183
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEK----KHLFRDRDKSAKSKRELIKTSDRE 438
R RDK +D KD SR+ + +H ++R+KS + + + +T DR+
Sbjct: 105 RERDRDKDRDSKGRDHEKDRSRRSRSRSERHRSQEREKSLEIEPKERETKDRD 157
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENNT 474
++ K +D+ KD K + H +DR + ++S+ E ++ +RE+ + +E T
Sbjct: 99 ERNGKDRERDRDKDRDSKGRDHE-KDRSRRSRSRSERHRSQEREKSLEIEPKERET 153
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 30.7 bits (66), Expect = 0.53
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 295 TTHRDKRHKRSAK---DKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
T H+ +HK + K D K+TS KEKK +++S+ + R + K S + K+YY
Sbjct: 5 TRHKSSKHKDATKEYSDSEKETSLKEKK----SKEESSTTVR-VSKESGSGDKRKEYYDS 59
Query: 466 NN 471
N
Sbjct: 60 VN 61
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE-EMAKDYYRE 465
R RD+ R +D D R + RDR + E +T DRE + ++DYY +
Sbjct: 336 RDRDRDRERDRDRRDYEHD--RYHDRDWDRDRSRDRDRDHERDRTHDREKDRSRDYYHD 392
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
R +RD + ++ ++ +R + RDRD+ RE + DR + D Y + +
Sbjct: 303 RERNRDYDRESDRNERDRERTRDRDRDYERDRDRDRDRDRE--RDRDRRDYEHDRYHDRD 360
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/48 (27%), Positives = 31/48 (64%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
D+ K S +++ KD+SRK+++ + R+++ +++ TS+R+ A+
Sbjct: 507 DRSKKLSREERVKDSSRKKEEAISSSREENLDKQKKDESTSNRKRKAE 554
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
H D + R + D KD+S+ +K RDK R+ K DRE+ ++D RE +
Sbjct: 31 HEDSK-SRESHDLKKDSSKISEKDNENGRDKDGNKDRDREKDRDREK-SRDRDREKS 85
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 271 KPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE 438
K + + + R K KD+ ++ R +K RDR+KS R+ ++ DR+
Sbjct: 44 KDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERSKDRQ 99
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 30.3 bits (65), Expect = 0.70
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 268 IKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMA 447
+K AVI ++K+ K+S + KEK R R + ++K E T D +E +
Sbjct: 140 VKETDAVIEDGVKEKKKKKSKSKSVEADDDKEKVSKKRKRSEPEETKEE---TEDDDEES 196
Query: 448 KDYYRENN 471
K +E N
Sbjct: 197 KRRKKEEN 204
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 30.3 bits (65), Expect = 0.70
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Frame = +1
Query: 289 IRTTHR-DKRHKRSAKDKYKDTSRKEKKHLFRDRD-----KSAKSK-RELIKTSDREEMA 447
+ HR D+R R + ++ +R EKK + DRD +S K K + + + SD E
Sbjct: 488 VEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEF 547
Query: 448 KDYYRENNTT 477
D YR T
Sbjct: 548 SDRYRSTKKT 557
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 29.9 bits (64), Expect = 0.93
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 304 RDKRHKRSAKDK-YKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
+DK ++ K+K KD KEKK +++K K ++E K E+ KD R+
Sbjct: 59 KDKEQEKKDKEKAAKDKKEKEKKDK-EEKEKKDKERKEKEKKDKLEKEKKDKERK 112
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
++K+ K + + KD KEKK R + + +R+ + D+EE
Sbjct: 86 KEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKERKAKEKKDKEE 131
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 29.9 bits (64), Expect = 0.93
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +1
Query: 301 HRDKRHKRS---AKDKYKDTSR---KEKKHLFRDRDKSAKSKRELIKTSDRE-EMAKDYY 459
HRD R K +KDK KD R ++K H RD++K KR + +++E +D
Sbjct: 27 HRDGRRKEKDHRSKDKEKDYDREKIRDKDHR-RDKEKERDRKRSRDEDTEKEISRGRDKE 85
Query: 460 RENN 471
RE +
Sbjct: 86 REKD 89
Score = 29.9 bits (64), Expect = 0.93
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +1
Query: 304 RDKRHKRSA-KDKYKDTSRKE--KKHLFRDRDKSAKS--KRELIKTSDRE-EMAKDYYRE 465
RDK H+R K++ + SR E +K + R RDK + R+ +K D+E E + RE
Sbjct: 52 RDKDHRRDKEKERDRKRSRDEDTEKEISRGRDKEREKDKSRDRVKEKDKEKERNRHKDRE 111
Query: 466 N 468
N
Sbjct: 112 N 112
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 337 KYKDTSRKEKKHLFRDRDKSAKSKRELIKTSD-REEMAKDYYRENN 471
+++D RKEK H R +DK RE I+ D R + K+ R+ +
Sbjct: 26 EHRDGRRKEKDH--RSKDKEKDYDREKIRDKDHRRDKEKERDRKRS 69
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 29.9 bits (64), Expect = 0.93
Identities = 14/56 (25%), Positives = 34/56 (60%)
Frame = +1
Query: 286 VIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKD 453
++ ++K + K+K ++ RKE+K + ++R+K + ++E +K +RE+ K+
Sbjct: 491 IVTLEKQNKLLEEEEKEKREEEERKERKRI-KEREKKLR-RKERLKEKEREKEQKN 544
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKD 453
R HR R K +DK ++ SR ++ R+R + + + K DRE ++
Sbjct: 77 RERHRSSRDKDRERDKVREGSRDKESD--RERSSKERDRSDRDKPRDRERRERE 128
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 310 KRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
K RS +DK +D R+E++ R + + + E+++ R K
Sbjct: 109 KERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVVERGSRRHRDK 155
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +1
Query: 268 IKPPQAVIRTTH-RDKRHKRS-AKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
+ P + ++H R K+ KRS KDK++ + +++K+H + + + KR+ ++ D E
Sbjct: 230 LSSPSFLSSSSHERQKKRKRSSKKDKHRRSKQRDKRHEKKRSMRDKRPKRKSRRSPDSLE 289
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 289 IRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYREN 468
IR KR + AK + ++ +KE++ + R + + KRE REE + RE+
Sbjct: 595 IREEQERKREEEMAKRREQERQKKEREEMERKKREEEARKREEEMAKIREEERQRKERED 654
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 280 QAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
QA R R+K + AK + ++ RKE++ + R R + + KR + REE K
Sbjct: 515 QARKREEEREKEEEM-AKKREEERQRKEREEVERKRREEQERKRREEEARKREEERK 570
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 304 RDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
R R ++ K + + R+E++ ++R++ + KRE EEMAK
Sbjct: 593 RKIREEQERKREEEMAKRREQERQKKEREEMERKKREEEARKREEEMAK 641
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 310 KRHKRSAKDKYKDTSRKEKKHLFRD--RDKSAKSKRELIKTSDREEMAKD 453
KR + AK + ++ RKE++ + R ++ K + E+ K ++E K+
Sbjct: 570 KREEEMAKRREQERQRKEREEVERKIREEQERKREEEMAKRREQERQKKE 619
>At3g53640.1 68416.m05925 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 642
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 268 IKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMA 447
+K ++ R ++RD RS++DK + +SR+ + R+R K R + +E+
Sbjct: 74 LKKKGSIDRESNRDNYRGRSSRDKARSSSRETGRENERERRKDQDRDRGRREDQSDQEIY 133
Query: 448 K 450
K
Sbjct: 134 K 134
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
+R+K+ K K K+ ++KEKK +D+ + K E ++EE
Sbjct: 1009 NREKKEYEEKKSKTKEEAKKEKKK-SQDKKREEKDSEERKSKKEKEE 1054
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKD 453
R + ++K R K K K+ KEKK + K + K+E D + M K+
Sbjct: 1046 RKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKE---HEDNKSMKKE 1096
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
DK+ K+S+KD+ K +KEK+ + K K++ + K + EE K
Sbjct: 1179 DKKEKKSSKDQQK---KKEKEMKESEEKKLKKNEEDRKKQTSVEENKK 1223
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +1
Query: 322 RSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENNTT 477
+ +D K+T++ E L ++ +K K K+E ++ + K+Y + + T
Sbjct: 972 KKQEDNKKETTKSENSKL-KEENKDNKEKKESEDSASKNREKKEYEEKKSKT 1022
>At1g69070.1 68414.m07903 expressed protein
Length = 901
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 152 MSNYEDDQSEDGELARSPIHDEMDFS-LSDED 244
+S+ E+D EDG L S + D+ D LSDED
Sbjct: 126 LSDGEEDVYEDGALGGSSVKDDFDSGLLSDED 157
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 289 IRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKS-AKSKRELIKTSDREEMAKDYY 459
+ H R++ KD+++ +E++ +R+K + K E K +RE+M ++ +
Sbjct: 122 VEREHEGDRNRAKEKDRHEKQKEREREREKLEREKEREREKIEREKEREREKMEREIF 179
>At5g27860.1 68418.m03342 expressed protein
Length = 177
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 298 THRDKRHKR--SAKDKYKDTSRKEKKHLFRDRDK 393
+ R K+H++ AKDK + S + K+H R+R K
Sbjct: 81 SRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKK 114
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.7 bits (61), Expect = 2.1
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 365 FSFLDVSLYLSFADLLWRLSLCVVLITA*GGLIISASGYLC-LRQIN*NPFRRV*DSVLI 189
F+F SLYL F ++L L L VL A I+S LC R++N N R V + I
Sbjct: 4146 FAFELPSLYLPFLNILKDLGLNDVLSVAAAKDILSKLQKLCGYRRLNPNELRAV---MEI 4202
Query: 188 LHLHFDRLH 162
LH D ++
Sbjct: 4203 LHFLCDEIN 4211
>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 385
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 316 HKRSAKDKYKDTS--RKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
+ R+ D+ + S R + + + DRD + +RE K +RE +D YRE
Sbjct: 224 YDRNGGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERER-GRDRYRE 274
>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 393
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 316 HKRSAKDKYKDTS--RKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
+ R+ D+ + S R + + + DRD + +RE K +RE +D YRE
Sbjct: 232 YDRNGGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERER-GRDRYRE 282
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 DKRHKR-SAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
++R KR + KD++++ S + + RDK R + S RE+
Sbjct: 846 ERRRKRYNKKDRHRNDSESDSSSDYHSRDKQGSRSRSKRRESSREK 891
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +1
Query: 277 PQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDY 456
P+ R R+ +H R +D R ++ R RD+ + +R+ + R+ ++D+
Sbjct: 286 PRERSRDRPREDKHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRD--RDRGRDRTSRDH 343
Query: 457 YRENN 471
R+ +
Sbjct: 344 DRDRS 348
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 256 DALIIKPPQAVIRTTHRDKRHK---RSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKT 426
D + I P ++ T +DK+ K R+ K+K D + + + R D+ R+ +T
Sbjct: 1011 DDIEIDEPVIILPLTEKDKKEKKDKRTDKEKLFDGASSDAQPKTRTVDEIKSKYRKAGET 1070
Query: 427 SDREEMAKDYYRE 465
S AKD E
Sbjct: 1071 SAIASQAKDKLHE 1083
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 301 HRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKREL 417
++DKR K AK K++ K+KK R RD + K EL
Sbjct: 41 NKDKRSKVYAKQKHEKKLEKQKK--IRARDAAEKRALEL 77
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
R+ R+K+ ++ + K KD +++K D+D S RE E++ Y NN
Sbjct: 550 RSKEREKKLRKKERLKEKDKGKEKKNPECSDKDMLLNSSRE------EEDLPNLYDETNN 603
Query: 472 T 474
T
Sbjct: 604 T 604
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +1
Query: 286 VIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKD 453
+I + K + K+K ++ RKEKK ++R+K + K+E +K D+ + K+
Sbjct: 522 IITLEKQVKLLEEEEKEKREEEERKEKKR-SKEREKKLR-KKERLKEKDKGKEKKN 575
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDR 435
R RD+R +D+ ++ R +++ RDR+++ + + SDR
Sbjct: 127 RNRDRDRRESGRDRDRDRNRDRDDRRDRHRDRERNRGDEEGEDRRSDR 174
>At3g13980.1 68416.m01765 expressed protein
Length = 357
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 352 SRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENNTT 477
S K+KKH + R+ S RE+ R +A D+ R T
Sbjct: 42 SIKKKKHHHQQRNASLHEDREISPIYHRRSIAADFERSRRKT 83
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRD 390
D+R K +++ +D R+ H RDRD
Sbjct: 209 DQRRKSPERERERDRDRRRDSHRHRDRD 236
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
R RD+ +R + +++D + RD D+ + +R + DRE +D+YRE +
Sbjct: 217 RERERDRDRRRDSH-RHRDRDYDRDYDMDRDHDRDYERERGHGRDRDRER-DRDHYRERD 274
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 27.1 bits (57), Expect = 6.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 211 RRNGFQFI*RRQR*PDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFR--D 384
RR+ + R QR D K Q + D+ + + DK SRK KH R
Sbjct: 613 RRSKRNYRSRSQRDEDG---KMEQGEEEESSMDEVTEETKTDKKHSCSRKRHKHKTRYSS 669
Query: 385 RDKSAKSKRELIKTSDREEMAKDYYRENNT 474
+D+ ++ K + +SD E ++ +R ++
Sbjct: 670 KDRHSRDKHKHESSSDDEYHSRSRHRHRHS 699
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 27.1 bits (57), Expect = 6.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 211 RRNGFQFI*RRQR*PDALIIKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFR--D 384
RR+ + R QR D K Q + D+ + + DK SRK KH R
Sbjct: 613 RRSKRNYRSRSQRDEDG---KMEQGEEEESSMDEVTEETKTDKKHSCSRKRHKHKTRYSS 669
Query: 385 RDKSAKSKRELIKTSDREEMAKDYYRENNT 474
+D+ ++ K + +SD E ++ +R ++
Sbjct: 670 KDRHSRDKHKHESSSDDEYHSRSRHRHRHS 699
>At5g44310.2 68418.m05424 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 331
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 KPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDK-SAKSKRELIKTSDREEMA 447
K + R + K AKDK D K K + +DK + + R K + +E A
Sbjct: 114 KVNEGASRAADKAYETKEKAKDKAYDVKEKTKDYAEEAKDKVNEGASRAADKAYETKEKA 173
Query: 448 KD 453
KD
Sbjct: 174 KD 175
>At5g44310.1 68418.m05423 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to 51 kDa seed maturation protein
[Glycine max] GI:414977; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 295
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 KPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDK-SAKSKRELIKTSDREEMA 447
K + R + K AKDK D K K + +DK + + R K + +E A
Sbjct: 78 KVNEGASRAADKAYETKEKAKDKAYDVKEKTKDYAEEAKDKVNEGASRAADKAYETKEKA 137
Query: 448 KD 453
KD
Sbjct: 138 KD 139
>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
similar to GT-2 factor [Arabidopsis thaliana GI:416490
Length = 619
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +2
Query: 152 MSNYEDDQSEDGELARSPIHDEMDFSLSDEDRDNQMR*LSSLLKQ*SEPHTGTSATRDLQ 331
+S + D + + SP D +L + + SSLL Q PH + + L+
Sbjct: 372 ISKFTDHDLDVVQNPTSPSQDSSSLALRKTQGRRKFQTSSSLLPQTLTPHNLLTIDKSLE 431
Query: 332 KINTKTHLEKKRS 370
+TKT K ++
Sbjct: 432 PFSTKTLKPKNQN 444
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
DK+ K+ K++ + +KEKK R+ K S++ K +E+ AK
Sbjct: 46 DKKDKKDKKERKEKKEKKEKKRKERE-GKEVGSEKRSHKRRRKEDGAK 92
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 310 KRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE 438
K +R K+K KD KE++ R+R+K +R + SD E
Sbjct: 808 KEKERDEKEKRKDKD-KERREKEREREKEKGKERSKREESDGE 849
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 292 RTTHRDK---RHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
R RD+ R RS + ++ SR +KH + +K K K DREE
Sbjct: 54 REDERDRTKDRRGRSVERGEREGSRDREKHHHERSHEGSKEKESRSKRKDREE 106
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 322 RSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE 438
+S KD+ + R+ K + D+S K KR+ + SDRE
Sbjct: 680 QSDKDRDRSKQRQRYKSDDPESDQSRKGKRQSEENSDRE 718
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
D + RS D Y R+ +K LF + +K K++ + REE
Sbjct: 291 DPAYARSIVDDYFAQHRESEKELFAEAEKERKAREDEEARIAREE 335
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREE 441
D + RS D Y R+ +K LF + +K K++ + REE
Sbjct: 345 DPAYARSIVDDYFAQHRESEKELFAEAEKERKAREDEEARIAREE 389
>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
Pfam domain, PF04935: Surfeit locus protein 6
Length = 386
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/58 (18%), Positives = 31/58 (53%)
Frame = +1
Query: 277 PQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
P+ + ++ H+DK+ + +K+K+ ++K + K + + + I+ + ++AK
Sbjct: 306 PKLLKQSIHKDKKRQEKNAEKWKERIEGQQKFKVEKQQKRSGNIADRIEQNKMRKIAK 363
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 319 KRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
K +KDK K + +KE ++ K+A + L + + A Y EN+
Sbjct: 10 KLKSKDKVKSSKKKEATSNVKEGPKTAGGEEALSNITKEKAAAAKLYIENH 60
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 319 KRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRENN 471
K +KDK K + +KE ++ K+A + L + + A Y EN+
Sbjct: 10 KLKSKDKVKSSKKKEATSNVKEGPKTAGGEEALSNITKEKAAAAKLYIENH 60
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 307 DKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAKDYYRE 465
+K K S K KDT EKK R +++ S + SD EE+ K +E
Sbjct: 301 EKCSKLSVAAKEKDTKEAEKKRQERRKERDRASSK---SNSDGEEVDKRTRKE 350
>At2g27285.1 68415.m03279 expressed protein weak similarity to maebl
(GI:20087019) [Plasmodium falciparum], chimeric
erythrocyte-binding protein MAEBL (GI:22086284)
[Plasmodium falciparum]
Length = 323
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 268 IKPPQAVIRTTHRDKRHKRSAKDKYKDTSRKEKKH-LFRDRDKSAKSKRELIKTSDREEM 444
+K + R R++R R ++ K R+EK+H + +R + + +++ SD+E+
Sbjct: 78 MKQKAVLPRMQDREERKPRYIQNLMKQAERREKEHEIVYERKLAKEREKDEHLFSDKEKF 137
Query: 445 AKDYYR 462
Y+
Sbjct: 138 VTGAYK 143
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 310 KRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDRE 438
+R + A+DK ++ R E++H DR++ + +RE + DRE
Sbjct: 361 RREDQRARDKERERER-EREH---DRERERQRERERQRARDRE 399
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 331 KDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
K+K KD +KEKK D K + + K +EMAK
Sbjct: 1289 KEKKKDKEKKEKKRKREDPVYLEKKRLKKEKKRKEKEMAK 1328
>At1g13350.1 68414.m01550 protein kinase family protein contains
protein kinase domain, Pfam:PF00069 (likely that this
cDNA contains a single unspliced intron. Putative intron
removed in this gene model.)
Length = 761
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 292 RTTHRDKRHKRSAKDKYKDTSRKEKKHLFRDRDKSAKSKRELIKTSDREEMAK 450
R R + S D+ KD R R RDK+ S RE + ++RE ++
Sbjct: 125 RRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSE 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,014,990
Number of Sequences: 28952
Number of extensions: 136625
Number of successful extensions: 762
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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