Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0105
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2...    29   0.49 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.5  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.0  
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    25   8.0  

>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 286 KRVSLCGSRPPTFNCYSSTNRSRHTTDTTV 197
           K  ++CG R PTF  Y  ++ S+ T   TV
Sbjct: 6   KSTTMCGKRKPTFEIYRESDFSKITNQGTV 35


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = -1

Query: 678 RSVKILLKLYLDHIS*TCTIYFTIFLHIYRSVSLVLKN------LFQIQIL-YGIRYQTL 520
           ++ + L+KL+ D IS T    F  +   YRS+S +         LF + IL +G R+ T+
Sbjct: 262 KTTRSLIKLFHDQISKTALEEFNFWQFYYRSLSRLNDQLHSRPVLFVLDILAFGKRFHTI 321

Query: 519 KS 514
            S
Sbjct: 322 AS 323


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 624 TIYFTIFLHIYRSVSLVLKNLFQIQILYG-IRYQ 526
           TIYF+  L   +  +L+ K+L  I  LYG + YQ
Sbjct: 132 TIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQ 165


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 669 KILLKLYLDHIS*TCTIYFTI 607
           KIL++LY +H   TC  ++T+
Sbjct: 12  KILIELYTEHAPKTCQNFYTL 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,937
Number of Sequences: 5004
Number of extensions: 57033
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)