Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0105
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 607 FSTYLQKCFTRFEKFIPNTNFVWNTLSNTKIKYNHKVYT*CLSVFDVFYYLVL 449
           FST+L    + F  F+P     W+ +S  ++  N  V+   LS+F  ++ LV+
Sbjct: 403 FSTHLTSFASDF--FVPPNKIDWSKISLDELAKNPTVFAFVLSIFGAYFLLVI 453


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 5    HLLKKFADYYTRCYSFTVEVNREHSNIGAS 94
            H  K   DY+ + Y F V+   EHS  GAS
Sbjct: 1095 HNYKLVKDYFQKYYGFLVKTKLEHSKNGAS 1124


>SB_50917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 618 YFTIFLHIYRSVSLVLKNLFQIQILYGIRYQTLKSNTIIKFILNVLVSLMYFIIW 454
           YFT+ L  +  +S++L  L  +  L   +  TL  N +   +   L+ + YF IW
Sbjct: 136 YFTVILSAWL-ISMILSGLTMLFYLTSNQKPTLILNVVAILLEIGLIIISYFAIW 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,965,500
Number of Sequences: 59808
Number of extensions: 384161
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)