Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0105
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.70 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.70 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  IVNIRTSVHRSTRMHRTSYPLDHDDFKLVMAAYNY 170
           + +IR S+  S  M+   YPLD     L MA+Y +
Sbjct: 149 LYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGW 183


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 66  IVNIRTSVHRSTRMHRTSYPLDHDDFKLVMAAYNY 170
           + +IR S+  S  M+   YPLD     L MA+Y +
Sbjct: 149 LYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGW 183


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 461 IKYIKDTKTLSINFMIVFDFS 523
           IKY K   T+  NFM + D +
Sbjct: 301 IKYYKSGSTVPFNFMFIADLN 321


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 141 FKLVMAAYNYAYGSRKTLLTVVSVVCRLR 227
           F+L     ++   S+KT++ ++  VC L+
Sbjct: 12  FRLSKVMLDHTINSKKTIMRILKEVCVLQ 40


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +1

Query: 238 NNS*TWADANHTVKHVFIKYLYSYISYPLPTIVFFRSF 351
           NN   + + N+  K  +  Y+ +    P+P  V++ +F
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYYGNF 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,392
Number of Sequences: 438
Number of extensions: 4009
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)