Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0105
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    29   3.0  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    29   3.0  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    28   6.9  

>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 280 VSLCGSRPPTFNCYSSTNRSRHTTDTT 200
           VS+ G+ PP ++  SS NRS H +  T
Sbjct: 23  VSVTGAPPPHYDSLSSENRSNHNSGNT 49


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 280 VSLCGSRPPTFNCYSSTNRSRHTTDTT 200
           VS+ G+ PP ++  SS NRS H +  T
Sbjct: 23  VSVTGAPPPHYDSLSSENRSNHNSGNT 49


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 613 YNFSTYLQKCFTRFEKFIPNTNFV-WNTLSNTKIKYNHKV 497
           Y F + L  CF  FE F  N + V WNT+    +++   V
Sbjct: 416 YTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPV 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,243
Number of Sequences: 28952
Number of extensions: 265501
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)