Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0104
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    33   0.057
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    32   0.076
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    27   2.2  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    27   2.2  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.2  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.8  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.0  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   5.0  
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    26   6.6  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   6.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.6  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.6  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    26   6.6  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.7  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   8.7  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   8.7  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 32.7 bits (71), Expect = 0.057
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 664 CNKKLSNQYNLRVHMETHAG-RRHACRAC 747
           CNK+ +  YNL+ HM TH   R   C  C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSIC 605



 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAG-RRHACRACS 750
           C IC K  + Q++ R H + H G +  AC  C+
Sbjct: 602 CSICKKSFARQHDKRRHEQLHTGIKAFACVTCN 634


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 664 CNKKLSNQYNLRVHMETH-AGRRHACRAC 747
           CNK+++ +YN+  H++TH + R + C  C
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLC 478


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 330 LTDADTNSTLTPTEPEPHENSSPINLEAKNETPTTENSFSFD-TPIKDAKEGEE 488
           L  + TNST  PT+    E ++  + E     PTT  + S   +P K A    E
Sbjct: 53  LQQSSTNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSE 106


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +3

Query: 324 SGLTDADTNSTLTPTEPEPHENSSPINLEAKNETPTTENSFSFDT---PIKDAKEGEE 488
           S  T   +    + TE E  E  +  N  A     TT N FSF+T   P   AK+  E
Sbjct: 221 SAFTPKGSFGEKSATEAEAKEKETSSNQTATGTAATTTNQFSFNTAANPFAFAKKENE 278


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 351 STLTPTEPE-PHENSSPINLEAKNETPTTENSFSFDTPI 464
           S  TPT P+ PH NSSP  L       +  N     +P+
Sbjct: 233 SPSTPTAPDFPHYNSSPSELSPTQRRSSISNGKDAPSPV 271


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +3

Query: 324 SGLTDADTNSTLT-PTEPEPHENSSPIN--LEAKNETPTTE---NSFSFDTPIKDAKEGE 485
           SG ++ DT++T + PTE       S  N  L+  N T       N F FD  +KD   G+
Sbjct: 666 SGKSNPDTSATPSAPTESTTVATKSSDNQLLDVGNSTDIDAALLNDFDFDKFLKDTSTGD 725

Query: 486 EI 491
           ++
Sbjct: 726 DL 727


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 348  NSTLTPTEPEPHENSSPINLEAKNETPTTENSFS-FDTPIKDAKEGEEIA 494
            ++T TP+         P + + K ETP+ E S S   +P+K  K+   ++
Sbjct: 1244 SATRTPSPAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDGNVS 1293


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 583 ARVTTDSVQILNDLIQFAQSIPFHRLPKLSAISSPSFASLIGVSNENEFSVVGVSF 416
           AR+   S  + NDL +    +  +R+P L   S PSF  ++G    +E +  G +F
Sbjct: 45  ARIDNPSGDVNNDLSKGFVDLKVYRVPDL---SRPSFNEVVGHKKFDETASKGDTF 97


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 435 ENSFSFDTPIKDAKEGEEIAESFGRRWK 518
           ENSF+F    K+ K  EE+       W+
Sbjct: 202 ENSFAFSGECKNRKYAEEVVRECNEAWE 229


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 652 VCGICNKKLSNQYNLRVHMETH--AGRRHAC 738
           VC IC K+ S + NLR H   H  A  R AC
Sbjct: 453 VC-ICGKRFSRRDNLRQHERLHVNASPRLAC 482


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 667 YIYRTRNS*DAIFFRNLLFLEHY*SKGCARVTTDSVQILNDLIQFAQSIPFHR-LPKLSA 491
           +IY ++N   ++F   LLF  H+  K  A +T    +++ D++ F Q     + +  +S+
Sbjct: 225 WIYHSKNKRRSLFLWKLLFFNHW--KLVALITI--TKLIQDVLAFVQPTLIQKTILFISS 280

Query: 490 ISSPS 476
            +SP+
Sbjct: 281 YTSPN 285


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/72 (25%), Positives = 38/72 (52%)
 Frame = +3

Query: 282 VLPSLLRLAQTLKVSGLTDADTNSTLTPTEPEPHENSSPINLEAKNETPTTENSFSFDTP 461
           V+P ++   ++L+ SG  + D  S  +PT   P +  S + + ++N+T +  ++     P
Sbjct: 349 VIPIIIVGIRSLRNSGSDEDDQPSADSPTLMHPSDLISSL-VNSQNQTTSVSDNTG---P 404

Query: 462 IKDAKEGEEIAE 497
            ++  E E I+E
Sbjct: 405 NENVNEAEHISE 416


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 327 GLTDADTNSTLT--PTEPEPHENSSP---INLEAKNETPTTENSFSFDTPIKDAKEGEEI 491
           G  + DT ST    P EPE  E S+P   + +E +NE+  ++ +         A+E +E 
Sbjct: 66  GDMENDTISTDVNKPAEPESKETSAPAAAVEIEKENESIISKETSQAPETSTGAEEHQET 125

Query: 492 AE 497
            E
Sbjct: 126 TE 127


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 599 LVKRLRSGYY*FCTNSE-RFDPVCSVYPFPSSAKAL 495
           L+  L SGY+ FC  S+ +FD   S+  +P+S K +
Sbjct: 600 LILALSSGYFQFCIESDSKFDEGTSL-EYPNSDKRI 634


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 310 CARRSNEGSTSRD-AVTSPVT*TSGGASVPLP--RILGPPR 197
           C R +N     +  + TSP+T  +  A+ PLP  RI+ PPR
Sbjct: 6   CGRLANRFVRLKSTSATSPITYKALHANSPLPRCRIIEPPR 46


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 346 RTQH*LQQSQSPTKIHRLSTWKRKTKHQRQ 435
           + Q  L+   S +++H LSTWK   K++ Q
Sbjct: 227 QNQDFLENFFSSSRLHHLSTWKADFKNEIQ 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,746
Number of Sequences: 5004
Number of extensions: 59792
Number of successful extensions: 231
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)