Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0104
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      38   1e-04
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    33   0.003
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    31   0.012
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          30   0.027
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    29   0.035
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +1

Query: 112 NVKAHRIVLASCSQYFAQLFKELEGDNTLVVVLGCEAAELKLLLTFM 252
           ++KAHR+VL++CS YF +L K     + ++V+     ++L  L+ F+
Sbjct: 42  SLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFI 88



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 258 GEVTASRLVLPSLLRLAQTLKVSGLT 335
           GEV   +  L S L+ A+ L+VSGLT
Sbjct: 91  GEVNVHQRSLSSFLKTAEVLRVSGLT 116



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHME 711
           C +C K LS +  L+ H E
Sbjct: 374 CDVCGKTLSTKLTLKRHKE 392



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 640 LTSSVCGICNKKLSNQYNLRVHMETHAGRR 729
           L S+VC +C+K      +L  H   +  R+
Sbjct: 399 LNSAVCALCHKVFRTLNSLNNHKSIYHRRQ 428


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAGRR-HACRAC 747
           C +C+K       L +HM TH G + + C+AC
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209



 Score = 31.5 bits (68), Expect = 0.009
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAGRR-HACRACS 750
           C +C +   +   L  HM  H G R H C  CS
Sbjct: 150 CDVCERAFEHSGKLHRHMRIHTGERPHKCTVCS 182



 Score = 29.1 bits (62), Expect = 0.047
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 652 VCGICNKKLSNQYNLRVHMETHAGRR-HACRAC 747
           VC  C K  +    L+VH  TH G + + C  C
Sbjct: 205 VCKACGKGFTCSKQLKVHTRTHTGEKPYTCDIC 237



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAGRR-HACRACS 750
           C IC K  +    L  H  TH G + + C  CS
Sbjct: 94  CNICGKTFAVPARLTRHYRTHTGEKPYQCEYCS 126



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAGRR-HACRAC 747
           C IC K     + L++H   H G + + C  C
Sbjct: 234 CDICGKSFGYNHVLKLHQVAHYGEKVYKCTLC 265



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 5/22 (22%), Positives = 15/22 (68%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHA 720
           C +C++   ++  + +H++TH+
Sbjct: 262 CTLCHETFGSKKTMELHIKTHS 283


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAGRR-HACRACS 750
           C  C+++     NLR H+  H G R +AC  C+
Sbjct: 40  CSHCDRQFVQVANLRRHLRVHTGERPYACELCA 72



 Score = 29.5 bits (63), Expect = 0.035
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAGRR-HACRAC 747
           C  C+K+ +  ++L+ HM  H G + + C  C
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHC 43


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.9 bits (64), Expect = 0.027
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +1

Query: 112 NVKAHRIVLASCSQYFAQL 168
           ++KAH++VL++CS YF +L
Sbjct: 46  SLKAHKVVLSACSSYFQKL 64



 Score = 28.3 bits (60), Expect = 0.081
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
 Frame = +3

Query: 258 GEVTASRLVLPSLLRLAQTLKVSGLTDADTNSTLTPT---EPEPHENSSP-INL-EAKNE 422
           GE+  S+  L SLL+ A  LK+ GL +   +    P+      P E  +P IN  + K  
Sbjct: 96  GEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRH 155

Query: 423 TP------TTENSFSFDTPIKDAKEGEEIAESFGRRWKGID*ANWIKSFRICTES 569
            P      TT    + D+   D  + EE  E++    K     +W      CTE+
Sbjct: 156 HPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETH-IDWQPEDEECTEA 209



 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 32  QNNVIGALNRMLQTGALTDVTLSASGPMLR 121
           Q+N+    +++LQT A  DVTL+ +   L+
Sbjct: 19  QSNMTSVFHQLLQTEAFVDVTLACNEASLK 48


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 29.5 bits (63), Expect = 0.035
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 655 CGICNKKLSNQYNLRVHMETHAGRR-HACRACS 750
           C +C K  S  + L+ H+ TH G +  +C+ C+
Sbjct: 45  CHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCN 77


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 586 CARVTTDSVQILNDLIQFAQSIPFHRLPKLSAISSPSFASLIGVSNENEFSVVGVSF 416
           C  +   S+ +      F    P   L +   + SP + +L  V  E EFSV+ VSF
Sbjct: 183 CKCIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSP-YRNLTFVRREGEFSVLQVSF 238


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 198 RGGPRMRGSGTEAPPDVHVTGEVTASRLVLPSLLRLAQTLKVSGLTDADTNSTLT 362
           R  PR++ + +  P    + G  ++  L + +LLRL    ++S  + A   S  T
Sbjct: 56  RSAPRVKKTASAGPIFGVIGGSYSSVSLQVANLLRLFHIPQISPASTAKALSDKT 110


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 592 LTNNVPETTDYEKKWR 639
           LT + PET +  K+WR
Sbjct: 264 LTKDQPETYELVKEWR 279


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 198 RGGPRMRGSGTEAPPDVHVTGEVTASRLVLPSLLRLAQTLKVSGLTDADTNSTLT 362
           R  PR++ + +  P    + G  ++  L + +LLRL    ++S  + A   S  T
Sbjct: 146 RSAPRVKKTASAGPIFGVIGGSYSSVSLQVANLLRLFHIPQISPASTAKALSDKT 200


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 215 HPRTTTRVLSPSSSLKSCAKYWLHD 141
           HPR      +  S++++C    LHD
Sbjct: 153 HPRCAVNNYNDPSNVRNCELVGLHD 177


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 154 IGYTMPGRFYAP 119
           +GY MP R +AP
Sbjct: 236 LGYVMPDRTFAP 247


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 99  LRVTSVRAPV*SIRFSAPMT 40
           +R+TSV++   SI + AP+T
Sbjct: 425 VRITSVKSSELSISWDAPIT 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,020
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)