Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0103
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   2.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   6.5  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 616 LKILKRLR--VAHVDSFV*LLIYSIRNNKDDHSLSERDFVNIEEE 744
           LK+  +LR  + H+     LLI+ + N  DD  +   +F   EEE
Sbjct: 709 LKVSNKLRKQILHLVEQNCLLIFDLHNGTDDTIVKSHNFQKFEEE 753


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 240  LVKKNCACTSVHT*EVKLLYGLIFRKM 320
            LVKK CA T   + E++ L+G+ F K+
Sbjct: 1042 LVKKTCARTDYMSSELQKLFGIHFHKL 1068


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  AIIYESFPNSGVNNVTVMPTRKYLYTNGR 136
           AI+  S P+SGV++V   PTR +  +  R
Sbjct: 268 AIVSSSAPSSGVSSVLNTPTRPHALSTPR 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,968
Number of Sequences: 5004
Number of extensions: 52138
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)