Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0103
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0036 + 427678-428029,431043-431968                               29   5.2  
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280...    28   6.8  

>10_01_0036 + 427678-428029,431043-431968
          Length = 425

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 541 ALEKNLPSHFSLRVTFFRYAPSVLYSC 461
           AL ++LP+H S R T F    +VL+ C
Sbjct: 223 ALRRHLPAHLSRRCTDFELLAAVLWRC 249


>06_01_0390 +
           2802334-2802339,2802461-2802618,2802755-2802826,
           2802967-2803114,2803234-2803503,2803741-2803904,
           2804184-2804236,2804302-2804496,2804597-2804694,
           2804787-2804891
          Length = 422

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 278 VRSETSLWPYFSKNDLH 328
           V   T+LWPYF+ N++H
Sbjct: 372 VNFHTALWPYFAHNNIH 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,492,658
Number of Sequences: 37544
Number of extensions: 267062
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)