Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0103
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>Z66562-4|CAA91465.1|  258|Caenorhabditis elegans Hypothetical
           protein F42E11.3 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
 Frame = -2

Query: 617 NVPRERHELKRIVKQVFFLK*NFFIGVGKKFTVTFFVTRH----IFPLRAICFVFMSMII 450
           NV R+ H L+ + +   FL   F++ +      TFF++ H    IF ++ I F    +I 
Sbjct: 18  NVFRKIHYLELLSQMFGFLFYTFYLIIFLVHGKTFFISEHTFKAIFIIQMITFGAALVIQ 77

Query: 449 K-SFCLN---FI*FNFFVFMSMIIKSFC 378
           K SF +N   ++ ++ F F+   + S C
Sbjct: 78  KFSFMVNSVEYVTYSTFPFIPKFVISIC 105


>Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical
           protein C06A1.2 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 280 YVCTLVHAQFFFTNYHVRNLIHI 212
           + CTL   +FFF  +H+ N+I++
Sbjct: 47  FTCTLKSFKFFFEKFHILNVIYL 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,271
Number of Sequences: 27780
Number of extensions: 280994
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)