Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0103
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22720.1 68418.m02654 F-box family protein contains F-box dom...    28   7.5  
At1g11960.1 68414.m01382 early-responsive to dehydration protein...    27   9.9  

>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 543 DKEVSLQKKNLLHNSLKLVSFTWDIKNSKAIKSG 644
           D EV LQK++++HN    +S   D+K S    +G
Sbjct: 287 DDEVDLQKRDMVHNFFTSISGVSDMKISSQAFAG 320


>At1g11960.1 68414.m01382 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein [Arabidopsis thaliana] GI:15375406
          Length = 375

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 718 VQIMNDRLYYFGYYISIIKQSYLHEPLLIA 629
           +Q  NDR+Y+  +Y+  I+ S LH   L++
Sbjct: 30  IQPFNDRVYFPKWYLKGIRSSPLHSGALVS 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,418,620
Number of Sequences: 28952
Number of extensions: 244944
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)