Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0102
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.1  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   1.9  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.6  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   7.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.6  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 666 SSVVKNTLTATFSPRHLASHTPRN 595
           ++V  N + ++ SPRH +SHTP N
Sbjct: 566 AAVSANDVLSSSSPRHFSSHTPVN 589


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 573 VESIGKGRYGECGSQDG 623
           V S+ KG++GECG + G
Sbjct: 321 VNSVSKGQFGECGQRGG 337


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 243 STRKNRVLLRRRPVQPSA 296
           S +KN+VL+  RP+ PS+
Sbjct: 339 SPKKNKVLVNMRPINPSS 356


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 188 LSADESGLMQCKSSQVPHQHPKESSAVTTT 277
           L +DE   +   SS+VP +HP  S   TT+
Sbjct: 82  LDSDEPPSVHGNSSKVPSKHPSPSFPETTS 111


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 155 GSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKESSAVTTTTCATFGSILSYL 313
           GS V    +   ++D+S  +  +S+Q P  +  ++S  +T + ++  S  SY+
Sbjct: 221 GSSVASSESTIANSDQSSFITYESTQNPTANKTDASQQSTESTSSSASAYSYI 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,336
Number of Sequences: 5004
Number of extensions: 43226
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)