Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0102
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0220 + 1866989-1868393,1868465-1869153                           29   2.6  
12_02_1284 + 27548813-27549826                                         29   4.5  
12_02_0794 + 23206796-23207590,23207620-23208148,23208444-232084...    29   4.5  
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540...    29   4.5  
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436...    28   5.9  
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228...    28   7.8  
11_05_0022 + 18442258-18442619,18443827-18443887,18444070-18444186     28   7.8  
08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499     28   7.8  

>01_01_0220 + 1866989-1868393,1868465-1869153
          Length = 697

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 453 ARLQEAAVSTSAADMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGECG 611
           AR++ A+ +        + S  GSG P L    +     +++  G GR  +CG
Sbjct: 482 ARMRIASAAARGLAYIHHASRRGSGTPRLAHGNIKSTNILLDKAGVGRLADCG 534


>12_02_1284 + 27548813-27549826
          Length = 337

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 274 DDLCNLRLHPQLSEPSPD--VTESPGVRPPITSSPT 375
           DD C+ R   QL+  +PD  V  +P  RP + + PT
Sbjct: 130 DDHCHARTLAQLAAAAPDLPVVTTPNARPVLAALPT 165


>12_02_0794 +
           23206796-23207590,23207620-23208148,23208444-23208468,
           23208775-23208837,23209136-23209157,23209369-23209482
          Length = 515

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 450 EARLQEAAVSTSAADMFRNISGSGSGLPLLVQRTVAKQIQMVE 578
           E   ++AAV+T +  +   I+ S +G PL+  R +  ++Q+VE
Sbjct: 405 EEEEEDAAVTTRSGSLLMAITSSPAGSPLICTR-IPSRVQLVE 446


>03_02_0069 +
           5401789-5401965,5403514-5403568,5403674-5405649,
           5405710-5405868,5406081-5406252,5406617-5406915,
           5407147-5407392
          Length = 1027

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +3

Query: 342 GGAAPDHEQSHLIGRHRSLRGSHRFPGSFFVVIQTTEARLQEAAVSTSAADMFR-NISGS 518
           GG    H     +GR R L G  + P   F      + R + AA+  S  +  R  +  S
Sbjct: 10  GGVKAKHSSDEALGRWRRLVGVVKNPKRRFRFTANLDKRSEAAAMKRSNQEKLRVAVLVS 69

Query: 519 GSGLPLLVQRTVAKQIQMVESIGKGRYGECGSQ 617
            + L  +     A +  + + +    YG C  +
Sbjct: 70  KAALQFIQGLAPASEYTVPDDVKAAGYGICAEE 102


>03_01_0591 -
           4366400-4366558,4366782-4366985,4367078-4367152,
           4367240-4367394,4367476-4367596,4367720-4367794,
           4369435-4369572,4369655-4369765,4369844-4369948,
           4370327-4370405,4370561-4370622,4370698-4370763,
           4370840-4371024,4371095-4371173
          Length = 537

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 561 QIQMVESIGKGRYGECGSQDG 623
           Q+  + S+ KG YGECG + G
Sbjct: 331 QLVSLHSVSKGYYGECGKRGG 351


>11_08_0048 -
           28022335-28022520,28022607-28022699,28022804-28022882,
           28022951-28023061,28023133-28023390,28023468-28023970,
           28024094-28024729,28024778-28025116
          Length = 734

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 316 PSPDVTESPGVRPPITSSPT 375
           P P V   PG  PP+ S PT
Sbjct: 298 PEPPVASPPGSEPPVASPPT 317


>11_05_0022 + 18442258-18442619,18443827-18443887,18444070-18444186
          Length = 179

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 514 GRALACRYSSKGLLPNKYRWWSPSGKGVTG 603
           G A A R SS    PN   WW+ SG G  G
Sbjct: 44  GHACAVRLSSDLCRPNPSLWWAFSGLGRRG 73


>08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499
          Length = 265

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 173 RTAGCLSADESGLMQCKSSQVPHQHPKESSAVTTTTCA-TFGSILSY 310
           R +  L A  +      S +VPH HP  ++A++T   A    S LSY
Sbjct: 4   RASHLLRATATATATAVSRRVPHPHPAPATAISTVLPAPKLASSLSY 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,987,200
Number of Sequences: 37544
Number of extensions: 384304
Number of successful extensions: 1547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)