Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0102
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)                     63   2e-10
SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           62   3e-10
SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)           62   5e-10
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)           54   1e-07
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   3.4  
SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)                   28   6.0  
SB_18596| Best HMM Match : ig (HMM E-Value=0.033)                      28   6.0  

>SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 662

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 29/52 (55%), Positives = 37/52 (71%)
 Frame = +3

Query: 450 EARLQEAAVSTSAADMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGE 605
           E R+   +   +  D F   S SGSGLPLLVQRT+AKQ+ +V+S+GKGRYGE
Sbjct: 333 ERRINFISSGETLKDYFDQSSASGSGLPLLVQRTIAKQVTLVQSVGKGRYGE 384



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +2

Query: 605 VWLARWRGEKVAVKVFFTTEEAS 673
           VW ARW GE VAVK+F +  E S
Sbjct: 385 VWKARWHGEDVAVKIFLSHCEKS 407



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 86  NGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQH 247
           N TC T   G C+   +++ +E G  ++  T GCL  +E   MQC +    H++
Sbjct: 203 NDTCTTT--GKCY---KKIAEEEGYELI--TYGCLPPEEQTDMQCNTPASVHRN 249


>SB_10837| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 386

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = +3

Query: 480 TSAADMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGE 605
           T A ++    SGSGSGLPLLVQRTVA++ Q++ESIGKGRYGE
Sbjct: 96  THAPNLIDISSGSGSGLPLLVQRTVARETQLIESIGKGRYGE 137



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 605 VWLARWRGEKVAVKVFFTTEEAS 673
           VW   ++GE VA+K+F TT+EAS
Sbjct: 138 VWKGVYQGESVAIKIFSTTDEAS 160


>SB_43658| Best HMM Match : Pkinase (HMM E-Value=1.49939e-42)
          Length = 457

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +3

Query: 492 DMFRNISGSGSGLPLLVQRTVAKQIQMVESIGKGRYGE 605
           D+    SGSGSGLPLLVQRTVA++ Q++ESIGKGRYGE
Sbjct: 171 DLIDISSGSGSGLPLLVQRTVARETQLIESIGKGRYGE 208



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 605 VWLARWRGEKVAVKVFFTTEEAS 673
           VW   ++GE VA+K+F TT+EAS
Sbjct: 209 VWKGVYQGESVAIKIFSTTDEAS 231


>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
          Length = 1602

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +3

Query: 510 SGSGSGLPLLVQRTVAKQIQMVESIGKGRYGE 605
           +GSGSGLPLLVQRTVA+QI  +E IG GRYG+
Sbjct: 196 TGSGSGLPLLVQRTVARQITPIELIGSGRYGD 227



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 605 VWLARWRGEKVAVKVFFTTEEAS 673
           V+  +WRGE VAVK+F + EE S
Sbjct: 228 VYRGQWRGEDVAVKIFSSREECS 250


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 256  IECCYDDDLCNLRLHPQLSEPSPDVTESPGVRPPITSSPT 375
            + C  +  LCN    P    PSP +  SP   P  + SP+
Sbjct: 1619 LSCQIESKLCNAIPCPASPSPSPSILPSPSSSPSPSPSPS 1658


>SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)
          Length = 519

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 508 FQGRALACRYSSKGLLPNKYRWWSPSGKGVTGSVA 612
           + G+ L+ +  ++GL   +  W+ PSG+ +T  V+
Sbjct: 379 WDGKVLSLQCKARGLPSPQITWYKPSGQPITAGVS 413


>SB_18596| Best HMM Match : ig (HMM E-Value=0.033)
          Length = 192

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 508 FQGRALACRYSSKGLLPNKYRWWSPSGKGVTGSVA 612
           + G+ L+ +  ++GL   +  W+ PSG+ +T  V+
Sbjct: 6   WDGKVLSLQCKARGLPSPQITWYKPSGQPITAGVS 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,602,247
Number of Sequences: 59808
Number of extensions: 376153
Number of successful extensions: 1214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)